PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_07763_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

BES1

Protein Properties

Length: 104aa MW: 11617 Da PI: 9.4234

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_07763_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	111.8	1.1e-34	20	85	12	77
DUF822 12 rEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskple 77 rEnn+rRE+ RRa akiy G RaqGny+lpk+ +nneVlkALc+ AGwvvedDGttyr+ +++ Cotton_A_07763_BGI-A2_v1.0 20 RENNRRREKGRRATVAKIYNGPRAQGNYNLPKHYNNNEVLKALCAKAGWVVEDDGTTYRNKVIHEN 85 9**********************************************************7766553 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	6.8E-32	19	81	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
MGDIDVDTKI KEEAIVEGGR ENNRRREKGR RATVAKIYNG PRAQGNYNLP KHYNNNEVLK 60 ALCAKAGWVV EDDGTTYRNK VIHENNSSYL KTITVGTEAL LTGP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	8e-19	32	78	391	437	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	8e-19	32	78	391	437	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	8e-19	32	78	391	437	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	8e-19	32	78	391	437	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589267	2e-84	JX589267.1 Gossypium hirsutum clone NBRI_GE23932 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006829668.1	8e-22	protein BZR1 homolog 3
TrEMBL	A0A444FK93	4e-22	A0A444FK93_ENSVE; Uncharacterized protein
STRING	ERM97084	3e-21	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15511	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19350.6	7e-23	BES1 family protein