PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_07749_BGI-A2_v1.0

Common Name

F383_21055

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRF

Protein Properties

Length: 444aa MW: 48666.6 Da PI: 10.0294

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_07749_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	71.7	8.6e-23	139	184	1	46
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 d+epgrCrRtDGKkWRCs++v++ +k+CE H+hrg+ rsrk++e+s Cotton_A_07749_BGI-A2_v1.0 139 DPEPGRCRRTDGKKWRCSKNVIPYQKYCEQHMHRGCRRSRKPVETS 184 79****************************************9975 PP
2	WRC	65.1	1e-20	336	374	2	41
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrk 41 epgrCrRtDGK+WRCsr+v++++k+C rH+hrg + ++ Cotton_A_07749_BGI-A2_v1.0 336 LEPGRCRRTDGKRWRCSRDVIPDQKYCARHMHRGARK-QT 374 59********************************544.44 PP
3	QLQ	31.6	5e-12	70	104	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT aQl+ L Q l++Ky+a + +vP +L+ +++k Cotton_A_07749_BGI-A2_v1.0 70 FTTAQLHDLQLQTLIFKYIAGGIQVPVNLVIPVWK 104 *********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51666	14.809	69	104	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.8E-7	70	103	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.906	139	183	IPR014977	WRC domain
Pfam	PF08879	4.1E-18	140	182	IPR014977	WRC domain
PROSITE profile	PS51667	21.704	335	381	IPR014977	WRC domain
Pfam	PF08879	7.6E-18	337	374	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MDAQPVQTRI LPDSGGGGSG AQERLEGKGR TVKMEEEETE KGGSPSIKLG LGIDGTTSEK 60 PVKKHGKCVF TTAQLHDLQL QTLIFKYIAG GIQVPVNLVI PVWKSVASSF GSVHGGIYER 120 YPSFVGVSPQ GLDYRNMADP EPGRCRRTDG KKWRCSKNVI PYQKYCEQHM HRGCRRSRKP 180 VETSQSALPD STSSKFSIRL SENSKNLPTP VSFQYTNPFS CNTSTSHGTT AIESSYVCSN 240 RNSISINAAT SGTIIATTKN DNKNDPKRNK NVRNISEKGE EKLSVSNNNT IKRSSKSGNK 300 ATVGNNISPS VGFSPKSVLQ VLGNSSSRAY KNEIELEPGR CRRTDGKRWR CSRDVIPDQK 360 YCARHMHRGA RKQTEVTRPV PVPSVGDCRL PSRLTTAYKA ACPALSTSLS ISIPRSQHIA 420 EDEKSTSSSS ETTISDTNDY CLRE

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MDAQPVQTRI LPDSGGGGSG AQERLEGKGR TVKMEEEETE KGGSPSIKLG LGIDGTTSEK  60
PVKKHGKCVF TTAQLHDLQL QTLIFKYIAG GIQVPVNLVI PVWKSVASSF GSVHGGIYER  120
YPSFVGVSPQ GLDYRNMADP EPGRCRRTDG KKWRCSKNVI PYQKYCEQHM HRGCRRSRKP  180
VETSQSALPD STSSKFSIRL SENSKNLPTP VSFQYTNPFS CNTSTSHGTT AIESSYVCSN  240
RNSISINAAT SGTIIATTKN DNKNDPKRNK NVRNISEKGE EKLSVSNNNT IKRSSKSGNK  300
ATVGNNISPS VGFSPKSVLQ VLGNSSSRAY KNEIELEPGR CRRTDGKRWR CSRDVIPDQK  360
YCARHMHRGA RKQTEVTRPV PVPSVGDCRL PSRLTTAYKA ACPALSTSLS ISIPRSQHIA  420
EDEKSTSSSS ETTISDTNDY CLRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017612700.1	0.0	PREDICTED: growth-regulating factor 9
TrEMBL	A0A0B0MKS8	0.0	A0A0B0MKS8_GOSAR; Uncharacterized protein
STRING	Gorai.007G092400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13760	20	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	2e-46	growth-regulating factor 9