PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_07701_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SBP | ||||||||
Protein Properties | Length: 420aa MW: 45942.3 Da PI: 7.4854 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.1 | 7.9e-41 | 186 | 262 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++ l +akeyhrrhkvCe+hskap+v+v g+eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk + Cotton_A_07701_BGI-A2_v1.0 186 RCQVEGCDVALVNAKEYHRRHKVCEMHSKAPKVVVLGIEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKGS 262 6*************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.1E-35 | 179 | 248 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.402 | 184 | 261 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-38 | 185 | 265 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.1E-32 | 187 | 260 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MENGGSMFLG NKGQTGNNSI NLAWDLRELN PTSTRFEWGG NDNINAFDLY ASTTSTTSSS 60 RAEMISSPSS TLPVANTAAP ALMFLPHHVN ATLAHHLNQE HSLYAGDGSH MHPDPHLVCL 120 KLGKRHYFED STSLTERHLV GGFSIGKKGN PYYNNNIGCG SGSVSGGLEP SSPIAVMGSP 180 ASTVPRCQVE GCDVALVNAK EYHRRHKVCE MHSKAPKVVV LGIEQRFCQQ CSRFHVVSEF 240 DDSKRSCRRR LAGHNERRRK GSHDSASRNS AQDAKLMTGR FPYHLSLPKG RALSLLSSRA 300 DSWISPSDLS SRSSAALQEL IAENRAADLA RQVVLDRGWQ LNHRGMEDLG VFSSTMAEQH 360 SLLPAPPQGW EKFQETGAEL TLNLMQASSS ASGMFVRGKS EDEEQECSEL WNSLQGTHVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-30 | 178 | 260 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ622332 | 0.0 | KJ622332.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL24) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017614189.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 7 isoform X1 | ||||
Swissprot | Q7XT42 | 5e-59 | SPL7_ORYSJ; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A2P5XX69 | 0.0 | A0A2P5XX69_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G087900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15613 | 9 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 3e-36 | squamosa promoter binding protein-like 10 |
Publications ? help Back to Top | |||
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