PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07685_BGI-A2_v1.0
Common NameF383_14320
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 292aa    MW: 32137.2 Da    PI: 7.3191
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07685_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.3e-18130184256
                                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 rk+ +++keq  +Lee F+++++++ +++  LA++l+L  rqV vWFqNrRa+ k
  Cotton_A_07685_BGI-A2_v1.0 130 RKKLRLSKEQSLVLEETFKEHSTLNPKHKLALAMQLNLRPRQVEVWFQNRRARTK 184
                                 788899***********************************************98 PP
2HD-ZIP_I/II124.54.8e-40130219191
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 +kk+rlskeq+ +LEe+F+e+++L+p++K +la +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+ke
  Cotton_A_07685_BGI-A2_v1.0 130 RKKLRLSKEQSLVLEETFKEHSTLNPKHKLALAMQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKE 212
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreel 91 
                                  +eLr +l
  Cotton_A_07685_BGI-A2_v1.0 213 AQELR-AL 219
                                 ****9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.9E-29199IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.8E-18108184IPR009057Homeodomain-like
SuperFamilySSF466892.44E-18113187IPR009057Homeodomain-like
PROSITE profilePS5007116.779126186IPR001356Homeobox domain
SMARTSM003892.2E-14128190IPR001356Homeobox domain
PfamPF000461.4E-15130184IPR001356Homeobox domain
CDDcd000864.67E-14130187No hitNo description
PROSITE patternPS000270161184IPR017970Homeobox, conserved site
PfamPF021831.2E-10186220IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.5E-24186229IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGGKEDGLGL SLSLGCAQNQ PSLKLNLMPL ASPCMQNLQR RNIWNELFQS SDGQLETRSV  60
AGGIDVNQAP ALAECEEEDG VSSPYSTVSS IGGKRSERDP VCDETEAERP SCSRSSDDED  120
GGGAGDDASR KKLRLSKEQS LVLEETFKEH STLNPKHKLA LAMQLNLRPR QVEVWFQNRR  180
ARTKLKQTEV DCEYLKRCCD NLTEENRRLQ KEAQELRALK LSPRLYTHIN PPTTLTMCPS  240
CERVAVASSS SSSLAASSVP NSMHQRPVPA SPWAALPLPV THRPFNAPAS RP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134SRKKLRL
2178186RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614467.10.0PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X1
SwissprotP466021e-102HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A2P5VR610.0A0A2P5VR61_GOSBA; Uncharacterized protein
STRINGGorai.007G086600.11e-180(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.12e-92homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]