PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07682_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 292aa    MW: 32314.3 Da    PI: 6.5071
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07682_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-18130184256
                                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 rk+ +++keq  +Lee F+++++++ +++  LA++l+L  rqV vWFqNrRa+ k
  Cotton_A_07682_BGI-A2_v1.0 130 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRARTK 184
                                 788899***********************************************98 PP
2HD-ZIP_I/II126.31.4e-40130219191
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 +kk+rlskeq+ +LEe+F+e+++L+p++K +la +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+ke
  Cotton_A_07682_BGI-A2_v1.0 130 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKE 212
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreel 91 
                                 v+eLr +l
  Cotton_A_07682_BGI-A2_v1.0 213 VQELR-AL 219
                                 ****9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.8E-28198IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.604.9E-18105187IPR009057Homeodomain-like
SuperFamilySSF466897.27E-19115187IPR009057Homeodomain-like
PROSITE profilePS5007117.006126186IPR001356Homeobox domain
SMARTSM003893.6E-15128190IPR001356Homeobox domain
PfamPF000467.8E-16130184IPR001356Homeobox domain
CDDcd000861.70E-15130187No hitNo description
PROSITE patternPS000270161184IPR017970Homeobox, conserved site
PfamPF021836.7E-12186220IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.6E-25186229IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDDKDDSLGL SLSLGCAQNQ PSLKLNLMPL ALPCMQNLQQ RNIWSELFQS SDGQLETRSV  60
AGGIDVNQAP ALTECEEEDG VSSPNSTVSS IGGKRNGRDP VCDETEAERP SCSRTSDDED  120
GVGAGDDASR KKLRLSKEQS LVLEETFKEH STLNPKQKLA LAMQLNLRPR QVEVWFQNRR  180
ARTKLKQTEV DCEYLKRCCD NLTEENRRLQ KEVQELRALK LSPQLYTHIN PPTTLTMCPS  240
CERVAVASSS SLSLPTSFAP NSKHQRPVPA SSWAALPLPV THRPFNASAS RP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134SRKKLRL
2178186RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614465.10.0PREDICTED: homeobox-leucine zipper protein HAT3-like
SwissprotP466021e-102HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A1U8JYH30.0A0A1U8JYH3_GOSHI; homeobox-leucine zipper protein HAT3-like
STRINGGorai.007G086600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.13e-94homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]