PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07636_BGI-A2_v1.0
Common NameF383_11285, MYB
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 186aa    MW: 21421.9 Da    PI: 10.1091
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07636_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.6e-112361448
                                HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                ++v+++G+g W++I++  g++R++k+c++rw +yl
  Cotton_A_07636_BGI-A2_v1.0  2 EYVRKHGKGKWNRIPKVTGLKRCGKSCRLRWINYL 36
                                79*******************************97 PP
2Myb_DNA-binding56.37.4e-184287148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rgr++ +E +l+++++++lG++ W++Ia +++ gRt++q+k++w+++l
  Cotton_A_07636_BGI-A2_v1.0 42 RGRFSDQENDLIIRLHNLLGNR-WSLIAGRVP-GRTDNQVKNHWNTHL 87
                                89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.775136IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-16143IPR009057Homeodomain-like
PfamPF002491.3E-9236IPR001005SANT/Myb domain
CDDcd001671.30E-6236No hitNo description
SuperFamilySSF466891.65E-23283IPR009057Homeodomain-like
SMARTSM007172.6238IPR001005SANT/Myb domain
PROSITE profilePS5129425.7453791IPR017930Myb domain
SMARTSM007178.7E-164189IPR001005SANT/Myb domain
PfamPF002495.2E-164287IPR001005SANT/Myb domain
CDDcd001671.57E-114487No hitNo description
Gene3DG3DSA:1.10.10.602.4E-254491IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEYVRKHGKG KWNRIPKVTG LKRCGKSCRL RWINYLSPGV KRGRFSDQEN DLIIRLHNLL  60
GNRWSLIAGR VPGRTDNQVK NHWNTHLSKK LGIIKNPTAH SSQSQTHSKS SRDDDNNHSQ  120
AQDQVMMTTT DALPSPRDYG NGSSSWFWQC HNNDHFNLYT PTPVNVLDLL DHDDHVSLDF  180
VWHGFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2219119108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2443490.0GU244349.1 Gossypium arboreum MYB transcription factor (MYB) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610196.11e-138PREDICTED: transcription factor MYB114-like
SwissprotQ9SEI05e-53WER_ARATH; Transcription factor WER
TrEMBLD2KP371e-137D2KP37_GOSAR; MYB transcription factor
STRINGGorai.007G001800.11e-132(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.13e-54myb domain protein 66
Publications ? help Back to Top
  1. Savage N, et al.
    Positional signaling and expression of ENHANCER OF TRY AND CPC1 are tuned to increase root hair density in response to phosphate deficiency in Arabidopsis thaliana.
    PLoS ONE, 2013. 8(10): p. e75452
    [PMID:24130712]
  2. Cheng Y, et al.
    Brassinosteroids control root epidermal cell fate via direct regulation of a MYB-bHLH-WD40 complex by GSK3-like kinases.
    Elife, 2018.
    [PMID:24771765]
  3. Kiefer CS, et al.
    Correction: Arabidopsis AIP1-2 restricted by WER-mediated patterning modulates planar polarity.
    Development, 2015. 142(5): p. 1022
    [PMID:25715402]
  4. Kwak SH,Song SK,Lee MM,Schiefelbein J
    TORNADO1 regulates root epidermal patterning through the WEREWOLF pathway in Arabidopsis thaliana.
    Plant Signal Behav, 2015. 10(12): p. e1103407
    [PMID:26451798]
  5. Zhu Y, et al.
    The Histone Chaperone NRP1 Interacts with WEREWOLF to Activate GLABRA2 in Arabidopsis Root Hair Development.
    Plant Cell, 2017. 29(2): p. 260-276
    [PMID:28138017]
  6. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]
  7. Mira MM, et al.
    Expression of Arabidopsis class 1 phytoglobin (AtPgb1) delays death and degradation of the root apical meristem during severe PEG-induced water deficit.
    J. Exp. Bot., 2017. 68(20): p. 5653-5668
    [PMID:29059380]
  8. Kohanová J, et al.
    Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots.
    Ann. Bot., 2018. 122(5): p. 903-914
    [PMID:29394308]