PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07573_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 329aa    MW: 37748.9 Da    PI: 9.3605
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07573_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.56.5e-401092501131
                         TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasecea 75 
                                 aa k+drhski T+ g+RdRR+Rls+++a++fF Lqd+LG+dk+s t+eWLl qakp+i +l+++        + s++  +++
  Cotton_A_07573_BGI-A2_v1.0 109 AASKTDRHSKINTANGPRDRRMRLSLDVAREFFGLQDMLGYDKASRTVEWLLIQAKPEINKLMNNnnnsfgfaK-SPS--STS 188
                                 5889*************************************************************666665431.222..122 PP

                         TCP  76 esssssasnsssg......kaaksaakskksqksaasalnlakesrakarararertrekmr 131
                                 e++++s+  + ++      k  +s++++k+++++++s++ la++ r kar+ra+ rt+ek++
  Cotton_A_07573_BGI-A2_v1.0 189 ETEVVSGIDKAAAidgnipKGTPSKKEKKERRQRKTSFRPLARDMRVKARERAKARTKEKNM 250
                                 23333333222225566667777777777777777789********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-40111250IPR005333Transcription factor, TCP
PROSITE profilePS5136931.701112170IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.009231248IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MFPSNSNGNN NDPITYFDNS ILPLSFFHFP SSPYYNQCEL LQLVDDYDVL WNQQQQQHFD  60
DDDDDQFLHQ TTLLTDNSVS ETIVNLPDCR HNNTTTDIHQ QPMPRKRPAA SKTDRHSKIN  120
TANGPRDRRM RLSLDVAREF FGLQDMLGYD KASRTVEWLL IQAKPEINKL MNNNNNSFGF  180
AKSPSSTSET EVVSGIDKAA AIDGNIPKGT PSKKEKKERR QRKTSFRPLA RDMRVKARER  240
AKARTKEKNM SLRLNNETKD NDPNRFGSSW SSTWTKQPGI QHHHNNNNTV LQANNINING  300
DRMIWSLNCL QNTGLINQEA QSFGKPREA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6229380.0JX622938.1 Gossypium hirsutum clone NBRI_GE69896 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609422.10.0PREDICTED: transcription factor TCP18-like
TrEMBLA0A1U8L7910.0A0A1U8L791_GOSHI; transcription factor TCP18-like
STRINGGorai.007G007500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.23e-30TCP family protein