PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07547_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 222aa    MW: 24632.6 Da    PI: 5.2132
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07547_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-1857107155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 + ++GVr++  +g+Wv+e+r+p++   + r++lg+f t+e+Aa+a++ a+++l+g
  Cotton_A_07547_BGI-A2_v1.0  57 PVFRGVRRRN-SGKWVCEVREPYK---KSRIWLGTFPTEEMAARAHDVAALALRG 107
                                 579****888.8*********765...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-1357107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-3058117IPR001471AP2/ERF domain
SMARTSM003808.1E-2958121IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-2158117IPR016177DNA-binding domain
PROSITE profilePS5103222.24758115IPR001471AP2/ERF domain
PRINTSPR003673.5E-85970IPR001471AP2/ERF domain
CDDcd000181.23E-2959117No hitNo description
PRINTSPR003673.5E-88197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDSLSLDYGS VSSPMSDSGS GNGASRPPNF SDEDVMLASC YPKKRAGRKK FRETRHPVFR  60
GVRRRNSGKW VCEVREPYKK SRIWLGTFPT EEMAARAHDV AALALRGRLA CLNFADSAWR  120
LPVPASTDPK DIQKAAAEAA EVFRPVDSAG DSSKTAENTA VEGTKESEEV FYLDEEAVFG  180
REKFLANMAA GMMMSPPHSG YEKDEQELEF VDDCVQLWSY SI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7801960.0KP780196.1 Gossypium hirsutum C-repeat binding factor 13 (CBF13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610271.11e-165PREDICTED: dehydration-responsive element-binding protein 1D-like
SwissprotQ9FJ932e-73DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A141AX541e-163A0A141AX54_GOSHI; C-repeat binding factor 13
TrEMBLA0A2P5WMY11e-163A0A2P5WMY1_GOSBA; Uncharacterized protein
STRINGGorai.007G010100.11e-144(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.19e-60C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]