PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_07547_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 24632.6 Da PI: 5.2132 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.6 | 3.1e-18 | 57 | 107 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ +g+Wv+e+r+p++ + r++lg+f t+e+Aa+a++ a+++l+g Cotton_A_07547_BGI-A2_v1.0 57 PVFRGVRRRN-SGKWVCEVREPYK---KSRIWLGTFPTEEMAARAHDVAALALRG 107 579****888.8*********765...6*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.5E-13 | 57 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-30 | 58 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.1E-29 | 58 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-21 | 58 | 117 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.247 | 58 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-8 | 59 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.23E-29 | 59 | 117 | No hit | No description |
PRINTS | PR00367 | 3.5E-8 | 81 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 222 aa Download sequence Send to blast |
MDSLSLDYGS VSSPMSDSGS GNGASRPPNF SDEDVMLASC YPKKRAGRKK FRETRHPVFR 60 GVRRRNSGKW VCEVREPYKK SRIWLGTFPT EEMAARAHDV AALALRGRLA CLNFADSAWR 120 LPVPASTDPK DIQKAAAEAA EVFRPVDSAG DSSKTAENTA VEGTKESEEV FYLDEEAVFG 180 REKFLANMAA GMMMSPPHSG YEKDEQELEF VDDCVQLWSY SI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00557 | DAP | Transfer from AT5G51990 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KP780196 | 0.0 | KP780196.1 Gossypium hirsutum C-repeat binding factor 13 (CBF13) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610271.1 | 1e-165 | PREDICTED: dehydration-responsive element-binding protein 1D-like | ||||
Swissprot | Q9FJ93 | 2e-73 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A141AX54 | 1e-163 | A0A141AX54_GOSHI; C-repeat binding factor 13 | ||||
TrEMBL | A0A2P5WMY1 | 1e-163 | A0A2P5WMY1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G010100.1 | 1e-144 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM355 | 28 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51990.1 | 9e-60 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|