PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_07511_BGI-A2_v1.0 | ||||||||
Common Name | F383_24251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 248aa MW: 28197.1 Da PI: 9.0626 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 117.6 | 1.2e-36 | 14 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 +p GfrFhPtdeelvv+yLk+k+ +l++ +vi+e+d+++++Pw++p + +++ yfFs+r+ + + ++ +ra+ sgyW Cotton_A_07511_BGI-A2_v1.0 14 MPIGFRFHPTDEELVVHYLKRKALCLPLPA-SVIPEFDVFQTDPWSMPGDM---KESKYFFSTRHDSFIN-NKCKRAAGSGYW 91 699***************************.99***************554...4567****99998765.7899999***** PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k gk+k++l++ ++++vg+++ ++f + + ++g++t+W++h+yrl Cotton_A_07511_BGI-A2_v1.0 92 KPIGKEKPILASgTNQVVGMRRAFIFCQRKCSNGTQTRWLLHQYRL 137 **********9967778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-40 | 10 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.462 | 14 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-21 | 15 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MESQNFVVNG GVKMPIGFRF HPTDEELVVH YLKRKALCLP LPASVIPEFD VFQTDPWSMP 60 GDMKESKYFF STRHDSFINN KCKRAAGSGY WKPIGKEKPI LASGTNQVVG MRRAFIFCQR 120 KCSNGTQTRW LLHQYRLVDS MPTLDSTQIS RSEMCGPDWL VFRVFQRKRS RRGKKHEVVS 180 HKSETSSAMN MPSCIDFTVE DSSVFGLPPQ PTSPSSTEIT EVSSHGLDQE ESSAFITSYY 240 SNGCMRNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-32 | 12 | 170 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-32 | 12 | 170 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-32 | 12 | 170 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-32 | 12 | 170 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-32 | 12 | 170 | 18 | 171 | NAC domain-containing protein 19 |
3swm_B | 6e-32 | 12 | 170 | 18 | 171 | NAC domain-containing protein 19 |
3swm_C | 6e-32 | 12 | 170 | 18 | 171 | NAC domain-containing protein 19 |
3swm_D | 6e-32 | 12 | 170 | 18 | 171 | NAC domain-containing protein 19 |
3swp_A | 6e-32 | 12 | 170 | 18 | 171 | NAC domain-containing protein 19 |
3swp_B | 6e-32 | 12 | 170 | 18 | 171 | NAC domain-containing protein 19 |
3swp_C | 6e-32 | 12 | 170 | 18 | 171 | NAC domain-containing protein 19 |
3swp_D | 6e-32 | 12 | 170 | 18 | 171 | NAC domain-containing protein 19 |
4dul_A | 5e-32 | 12 | 170 | 15 | 168 | NAC domain-containing protein 19 |
4dul_B | 5e-32 | 12 | 170 | 15 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 171 | QRKRSRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX589385 | 8e-74 | JX589385.1 Gossypium hirsutum clone NBRI_GE24075 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017648339.1 | 0.0 | PREDICTED: NAC domain-containing protein 83-like | ||||
TrEMBL | A0A0B0MQS1 | 0.0 | A0A0B0MQS1_GOSAR; NAC domain-containing 68 | ||||
TrEMBL | A0A2P5WH21 | 0.0 | A0A2P5WH21_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G087700.1 | 1e-170 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1806 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-52 | NAC domain containing protein 83 |