PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07511_BGI-A2_v1.0
Common NameF383_24251
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 248aa    MW: 28197.1 Da    PI: 9.0626
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07511_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.61.2e-36141371128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 +p GfrFhPtdeelvv+yLk+k+   +l++ +vi+e+d+++++Pw++p  +   +++ yfFs+r+ +  + ++ +ra+ sgyW
  Cotton_A_07511_BGI-A2_v1.0  14 MPIGFRFHPTDEELVVHYLKRKALCLPLPA-SVIPEFDVFQTDPWSMPGDM---KESKYFFSTRHDSFIN-NKCKRAAGSGYW 91 
                                 699***************************.99***************554...4567****99998765.7899999***** PP

                         NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 k  gk+k++l++ ++++vg+++ ++f + + ++g++t+W++h+yrl
  Cotton_A_07511_BGI-A2_v1.0  92 KPIGKEKPILASgTNQVVGMRRAFIFCQRKCSNGTQTRWLLHQYRL 137
                                 **********9967778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-4010166IPR003441NAC domain
PROSITE profilePS5100542.46214167IPR003441NAC domain
PfamPF023655.0E-2115137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MESQNFVVNG GVKMPIGFRF HPTDEELVVH YLKRKALCLP LPASVIPEFD VFQTDPWSMP  60
GDMKESKYFF STRHDSFINN KCKRAAGSGY WKPIGKEKPI LASGTNQVVG MRRAFIFCQR  120
KCSNGTQTRW LLHQYRLVDS MPTLDSTQIS RSEMCGPDWL VFRVFQRKRS RRGKKHEVVS  180
HKSETSSAMN MPSCIDFTVE DSSVFGLPPQ PTSPSSTEIT EVSSHGLDQE ESSAFITSYY  240
SNGCMRNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-321217015168NO APICAL MERISTEM PROTEIN
1ut4_B5e-321217015168NO APICAL MERISTEM PROTEIN
1ut7_A5e-321217015168NO APICAL MERISTEM PROTEIN
1ut7_B5e-321217015168NO APICAL MERISTEM PROTEIN
3swm_A6e-321217018171NAC domain-containing protein 19
3swm_B6e-321217018171NAC domain-containing protein 19
3swm_C6e-321217018171NAC domain-containing protein 19
3swm_D6e-321217018171NAC domain-containing protein 19
3swp_A6e-321217018171NAC domain-containing protein 19
3swp_B6e-321217018171NAC domain-containing protein 19
3swp_C6e-321217018171NAC domain-containing protein 19
3swp_D6e-321217018171NAC domain-containing protein 19
4dul_A5e-321217015168NAC domain-containing protein 19
4dul_B5e-321217015168NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171QRKRSRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5893858e-74JX589385.1 Gossypium hirsutum clone NBRI_GE24075 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648339.10.0PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A0B0MQS10.0A0A0B0MQS1_GOSAR; NAC domain-containing 68
TrEMBLA0A2P5WH210.0A0A2P5WH21_GOSBA; Uncharacterized protein
STRINGGorai.011G087700.11e-170(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-52NAC domain containing protein 83