PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_07501_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 298aa MW: 31710.2 Da PI: 7.9704 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.4 | 7.4e-36 | 51 | 149 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ a++s+s+++ Cotton_A_07501_BGI-A2_v1.0 51 APKRSSNKDRHIKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALaAAGASVSQQG 133 789******************************************************************99965555555544 PP TCP 84 nsssg...........k 89 s + Cotton_A_07501_BGI-A2_v1.0 134 GSL-SaglhqkmedlgG 149 222.2244333334440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.6E-30 | 56 | 244 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.28 | 57 | 111 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MDPKGSKELP NFLSLPTQPQ QELQNMGESK AAETKDVVVA DKEEGKKQQL APKRSSNKDR 60 HIKVEGRGRR IRMPALCAAR IFQLTRELGH KSDGETIQWL LQQAEPSIIA ATGSGTIPAS 120 ALAAAGASVS QQGGSLSAGL HQKMEDLGGS SVGSGSSRTN WGMVGGNLGR PHHVATGSWP 180 PVSGYGFQSS SAPSTTNLGS EGSNYLQKIG FPGFDLTATT MGQMSFTSML GAANQQLPGL 240 ELGLSQEGHF GVLNPQALTQ IYQQMGQARV HQQQQHQNHH HHHHQQPSAK DDSEGSGE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017647246.1 | 0.0 | PREDICTED: transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 5e-83 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A0B0MX67 | 0.0 | A0A0B0MX67_GOSAR; Transcription factor TCP20-like protein | ||||
STRING | Gorai.011G086900.1 | 1e-172 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4050 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 2e-76 | TCP family protein |