PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_07409_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 438aa MW: 48620.7 Da PI: 9.0663

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_07409_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.5	5e-08	257	301	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Cotton_A_07409_BGI-A2_v1.0 257 LAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 301 68*******************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-15	249	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.424	250	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-14	255	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.1E-10	256	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.08E-8	256	305	No hit	No description
Pfam	PF00010	3.9E-5	257	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
RFLMAEGLRT GEQKWNSYPF GIEMQRHELN SASEKVGNCF FNPNWDNSMV QSGSFDSSLS 60 SMVSSSSAIS NAETVLPGYE HNMVIRKLIG RLGNDYNYSS YTSSQPLIKS NNANTPLNII 120 PKLNLPFSSD PGFSERAPRF SSFNGELGFN RNEFQANIPD SKRESLLVSE NIPRQNNVNS 180 RKRKSIPSGK AEETPSMAAA DRKIVAGAKR SKKDRAGKEH HGNGEKHNKV KSKAAMAPME 240 YVHVRARRGQ ATDGQSLAER VRREKISERM KLLQDLVPGC NKVTGKALML DEIINYVQSL 300 QCQVEFLSMK LATLNPRMDI NMESIVSMDM FRCCGSLPST MFSIDSSASV FGFGYEHQQG 360 VPMHNGDLHS IVQMGFGQNQ PQSYQGMVGH STMFSIDSSA SVFGFGYEHQ QGVPMHNGDL 420 HSIVQMGFGQ NQPQSYQG

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

RFLMAEGLRT GEQKWNSYPF GIEMQRHELN SASEKVGNCF FNPNWDNSMV QSGSFDSSLS  60
SMVSSSSAIS NAETVLPGYE HNMVIRKLIG RLGNDYNYSS YTSSQPLIKS NNANTPLNII  120
PKLNLPFSSD PGFSERAPRF SSFNGELGFN RNEFQANIPD SKRESLLVSE NIPRQNNVNS  180
RKRKSIPSGK AEETPSMAAA DRKIVAGAKR SKKDRAGKEH HGNGEKHNKV KSKAAMAPME  240
YVHVRARRGQ ATDGQSLAER VRREKISERM KLLQDLVPGC NKVTGKALML DEIINYVQSL  300
QCQVEFLSMK LATLNPRMDI NMESIVSMDM FRCCGSLPST MFSIDSSASV FGFGYEHQQG  360
VPMHNGDLHS IVQMGFGQNQ PQSYQGMVGH STMFSIDSSA SVFGFGYEHQ QGVPMHNGDL  420
HSIVQMGFGQ NQPQSYQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	184	SRKRKS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012486967.1	0.0	PREDICTED: transcription factor bHLH77-like
Swissprot	Q9LK48	4e-66	BH077_ARATH; Transcription factor bHLH77
TrEMBL	A0A2P5XDQ3	0.0	A0A2P5XDQ3_GOSBA; Uncharacterized protein
STRING	Gorai.006G225700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24423	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	2e-68	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]