PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07377_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 306aa    MW: 33960.1 Da    PI: 6.9474
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07377_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-19157206356
                         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                 ++GVr+++ +g+WvAeIr p++   r+r++lg+f+tae Aa a++ a+  l+ge
  Cotton_A_07377_BGI-A2_v1.0 157 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEAAAMAYDTAAYILRGE 206
                                 8******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-21155215No hitNo description
Gene3DG3DSA:3.30.730.102.0E-31156214IPR001471AP2/ERF domain
PROSITE profilePS5103222.563156213IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-22156214IPR016177DNA-binding domain
SMARTSM003801.1E-35156219IPR001471AP2/ERF domain
PfamPF008472.2E-12157206IPR001471AP2/ERF domain
PRINTSPR003671.2E-10157168IPR001471AP2/ERF domain
PRINTSPR003671.2E-10179195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
METFMNKDWP SFCYGMATTG STFFNNPIIW GSSSSEETPG SNLLKNVPGF INQDINHGFN  60
PINQAQPSPS MATTMSQFPD LTSLFGPSKP VIDPINENPP LQTPQQWLRI NQSFTNDQSK  120
GFSDYWLSTT KTHPMKYSGR RFQNQHQKGY SSPGKLFRGV RQRHWGKWVA EIRLPRNRTR  180
VWLGTFDTAE AAAMAYDTAA YILRGECAQL NFPDLKDQVM ANSLNGNTAA ILGAKLQALS  240
QGSTVNKKSD LDTTTTMPAE DGVSGLNRNT TKNMEALSSD VDGVQLSRLP SMDMDIIWDA  300
LLVSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19152213163ATERF1
3gcc_A1e-19152213163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147881e-116JX614788.1 Gossypium hirsutum clone NBRI_GE58430 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610162.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
SwissprotQ9SVQ03e-65ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLA0A2P5WQV10.0A0A2P5WQV1_GOSBA; Uncharacterized protein
STRINGGorai.006G222600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-55ERF family protein