PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07321_BGI-A2_v1.0
Common NameF383_01067
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 295aa    MW: 33266.3 Da    PI: 9.4588
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07321_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.4e-14100151155
                                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 +r++h ++Er+RR+++N+ +  Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Cotton_A_07321_BGI-A2_v1.0 100 QRMTHIAVERNRRKQMNEHLTVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 151
                                 79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.16E-1298155No hitNo description
SuperFamilySSF474597.2E-1798170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.14299150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-14100167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-11100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-10105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MALETLSSNE LLNFIIYDTI FATPCSSHHH ESLVTDFSME NSFSSLEQAR NSGNALSCLP  60
MVTPKCRSKG MERSNLAVQG RKKRRRKPRV CKNKAEAETQ RMTHIAVERN RRKQMNEHLT  120
VLRSLMPESY VQRGDQASIV GGAIEFVKEL EHLLQTLEAQ KHRVETNKSL LSSSSSPPFA  180
QFFTHPQYTW SQIPNKHTPK TKASIADIEV TLIQTHANLR ILTRKVHKQL PKLVAGLHSL  240
YLSILHLNVT SMDTLILYSI SVKVEEGCQL NSVDNIAGAV HNMLRIIEEE ATALC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086RKKRRRK
28087RKKRRRKP
38186KKRRRK
4100111RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017607877.10.0PREDICTED: transcription factor bHLH71-like
SwissprotQ9C7T49e-71BH096_ARATH; Transcription factor bHLH96
SwissprotQ9SK915e-71BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A2P5W4T30.0A0A2P5W4T3_GOSBA; Uncharacterized protein
STRINGGorai.006G217200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2441734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]