PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07235_BGI-A2_v1.0
Common NameF383_02997
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 687aa    MW: 75360.4 Da    PI: 5.7112
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07235_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.19.7e-29230283155
                     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                 kpr++W+ eLH++Fv av++L G +kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Cotton_A_07235_BGI-A2_v1.0 230 KPRVVWSVELHRKFVAAVNHL-GLDKAVPKKILDLMNVEGLTRENVASHLQKYRL 283
                                 79*******************.********************************8 PP
2Response_reg62.62.1e-217015624109
                                 EEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--H CS
                Response_reg  24 eevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdp 104
                                 +e +++ ++ +al++l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++ +++ + +  Ga d+l Kp+ +
  Cotton_A_07235_BGI-A2_v1.0  70 QELTTTNQAISALKMLRENRnrYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTKLVMKGITHGACDYLLKPVRI 151
                                 5778888899999999888889*******************87754.558********************************* PP

                                 HHHHH CS
                Response_reg 105 eelvk 109
                                 eel +
  Cotton_A_07235_BGI-A2_v1.0 152 EELKN 156
                                 **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.56E-2823169IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.6E-3723200No hitNo description
SMARTSM004482.5E-2224158IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.37325162IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.08E-2327161No hitNo description
PIRSFPIRSF0363927.8E-14765686IPR017053Response regulator B-type, plant
PfamPF000723.3E-1870156IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129412.375227286IPR017930Myb domain
SuperFamilySSF466897.53E-20227287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-30228288IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-25230283IPR006447Myb domain, plants
PfamPF002492.7E-7232282IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MTMEEKMGGS NREDEAMDRF PVGMRVLAVD DDPICLKVLG TLLLKCQYQD LSGVVCKCAF  60
NLDLCNCTVQ ELTTTNQAIS ALKMLRENRN RYDLVISDVN MPDMDGFKLL ELVGLEMDLP  120
VIMLSAHSDT KLVMKGITHG ACDYLLKPVR IEELKNIWQH VVRRKKPDSK DRVNALNQDK  180
ASGGIGEAVQ TSTSCSDQKF NKKRKDQNED EEDDGEDNEH ENDDPSTQKK PRVVWSVELH  240
RKFVAAVNHL GLDKAVPKKI LDLMNVEGLT RENVASHLQK YRLYLKRLSS VATQQANMVA  300
ALGGKDPSYL RMGSLDGFGD FRTLTGSGRL SSASLSSYQP SGMFGRLNSS AALNLRGISS  360
GVIQQGHPQT LSNSINGLGK IQPVGLPANQ NQNGTLFQGI PTSIELNQLS QNKSANHFGE  420
LNPVNNPNVF GVATNFPDAR MTVGSSSSSL STPSGSPLLL QANTQQAQHS GAIGNQSSLG  480
VASLNQESFD MGVHGFSNFV DNGRCHENWQ NTVQLSSFPS NSLSTCEAFS HEQLHTNNLQ  540
ESISWRSSHL SDNPIDLSAS MANAGLEHSR GDMQCQISPS NNVIHNIDYA AKRQWGENSS  600
FAGADSLVSG APYVQHLEAG KLAFNTKLRS NEDFLFEQRK PQNEFSQNNF ETLDIISSSM  660
IKPEQYNETG MMEGELGYDA FPLGSCI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-26226289164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5251072e-70HQ525107.1 Gossypium herbaceum clone NBRI_A_EYI1BW401BL3EZ simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628199.10.0PREDICTED: two-component response regulator ARR12-like
SwissprotQ6K8X61e-141ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A1U8J0510.0A0A1U8J051_GOSHI; Two-component response regulator
STRINGGorai.001G030600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-117response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]