PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07211_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 957aa    MW: 106256 Da    PI: 4.9474
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07211_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.32.1e-193985148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g WT+eEde+l +av+q+ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Cotton_A_07211_BGI-A2_v1.0 39 KGQWTPEEDEILRKAVQQFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 85
                                799****************************9.************986 PP
2Myb_DNA-binding65.11.3e-2091137148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 +g+W++eEdel++++v+++G++ W+tIa++++ gR +kqc++rw+++l
  Cotton_A_07211_BGI-A2_v1.0  91 KGPWSKEEDELIIELVNKFGPKKWSTIAQHLP-GRIGKQCRERWHNHL 137
                                 79******************************.*************97 PP
3Myb_DNA-binding47.93.1e-15143185145
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                 + +WT eE++ l++a++ +G++ W+  ++ ++ gRt++ +k++w+
  Cotton_A_07211_BGI-A2_v1.0 143 KEAWTREEELALIRAHQVYGNK-WAELSKFLP-GRTDNAIKNHWN 185
                                 579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.8263485IPR017930Myb domain
SuperFamilySSF466896.96E-193799IPR009057Homeodomain-like
SMARTSM007173.4E-163887IPR001005SANT/Myb domain
PfamPF002491.4E-163985IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-254197IPR009057Homeodomain-like
CDDcd001678.73E-154285No hitNo description
PROSITE profilePS5129433.03486141IPR017930Myb domain
SuperFamilySSF466899.73E-3288184IPR009057Homeodomain-like
SMARTSM007171.5E-1990139IPR001005SANT/Myb domain
PfamPF002493.2E-1991137IPR001005SANT/Myb domain
CDDcd001673.72E-1793137No hitNo description
Gene3DG3DSA:1.10.10.607.0E-2898140IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-21141192IPR009057Homeodomain-like
SMARTSM007172.5E-15142190IPR001005SANT/Myb domain
PROSITE profilePS5129420.063142192IPR017930Myb domain
PfamPF002491.3E-13143186IPR001005SANT/Myb domain
CDDcd001675.17E-12145185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 957 aa     Download sequence    Send to blast
MDGDGTISTP SVGPSISDGA QRMRAFHGRT SGPTRRSTKG QWTPEEDEIL RKAVQQFKGK  60
NWKKIAECFK DRTDVQCLHR WQKVLNPELV KGPWSKEEDE LIIELVNKFG PKKWSTIAQH  120
LPGRIGKQCR ERWHNHLNPA INKEAWTREE ELALIRAHQV YGNKWAELSK FLPGRTDNAI  180
KNHWNSSVKK KVDSCVASGL LEQFQFPLLT NQSQSMPSSS SRIQRNVDDS GAKCRTEADD  240
ISECSQDPTM AGCFQPTRDL ANAAVHTREH LHLTEISGVG KEKNSCPAPC SEEYYPSLED  300
VSFSIPEIPG EAGYSTCGDY QFGLTNLANP SSLELGQESS GFKNHCIDTS RCHEVMNVAL  360
QTSVGLNTPT SFINTVTNFD KQEHMLITDD ECCRVLFSET VTDGCFVSED LTQGYNMVES  420
CSHTHASSSQ ASDIQKSETG IMPALQSNCP SRSEVLPTSC CQSFVSPLIS VEDGTTLIYG  480
REPGQLTGQP FETQEQELTM NVHDGFICTS DDHTYDTDLQ ERSNLDKDSP KLVPVNTFGS  540
ESNAMQTCPI VDDKPNLPAE QDGGGLCYEP PRFPSLDIPF FSCDLISSGC DKQQEYSPFG  600
IRQLMMSSMN CISPFRLSDS PLWDDSPDAK LKSAAKTFTR TPSILKKRHR DLLSPLSERR  660
CGKKLETDMT SNLSKEFSCL DVMLDASGTG NKSQESPSEC KTKSGVFIEE KENLCQAVDQ  720
EQYNGGDHTE PLDDEAQKKG SNGINSQGDI EKEACVTDAK DKTYANASDK IVQRPPEVLV  780
EHNLNDLLLF SPEHVGLKAD RPLFFSETPL KRSIESPSAW KSPWFINSFV PGPRIDTEIT  840
IEDIGYLMSP PDRSYDAIGL MKQLSEHTAT TYADALEVLG NETPESIVKG RRSNNSKMDK  900
ENNQMETQSH LASDILVERR ILDFSECGTP GKGTENRKSS TAVSFSSPSS YLLKGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-70391926159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-70391926159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017603333.10.0PREDICTED: myb-related protein 3R-1 isoform X2
SwissprotQ9S7G70.0MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLA0A2P5XZ740.0A0A2P5XZ74_GOSBA; Uncharacterized protein
STRINGGorai.001G028200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46742649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]