PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07197_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 833aa    MW: 91664 Da    PI: 6.6007
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07197_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.2e-181977357
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                k  ++t+eq+e+Le+l++++++ps  +r++L ++     +++ +q+kvWFqNrR +ek+
  Cotton_A_07197_BGI-A2_v1.0 19 KYVRYTPEQVEALERLYYECPKPSSMRRQQLIREYpilsNIEPKQIKVWFQNRRCREKQ 77
                                5679*****************************************************97 PP

2START1587.3e-501653662205
                                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEE CS
                       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlev 84 
                                 +a e+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++v
  Cotton_A_07197_BGI-A2_v1.0 165 IADETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPT-RVAEILKDRPSWFRDCRAVDVINV 246
                                 68899*****************************************************.8888888888************** PP

                                 ECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCE CS
                       START  85 issg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksngh 161
                                 +s+g  g+++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+
  Cotton_A_07197_BGI-A2_v1.0 247 LSTGngGTIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPNmppAANFVRAEMLPSGYLIRPCEGGG 329
                                 ********************************************************9999*********************** PP

                                 EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                       START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                                 s +++        ++++++lr+l++s++  ++kt++a+l+++++
  Cotton_A_07197_BGI-A2_v1.0 330 SIIHI-------PWSVPEVLRPLYESSTLLAQKTTMAALRHLRQ 366
                                 **998.......9**************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.8391478IPR001356Homeobox domain
SMARTSM003892.6E-141682IPR001356Homeobox domain
CDDcd000861.38E-151979No hitNo description
SuperFamilySSF466898.13E-161982IPR009057Homeodomain-like
PfamPF000461.6E-152077IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-172177IPR009057Homeodomain-like
CDDcd146861.14E-671110No hitNo description
PROSITE profilePS5084822.913155376IPR002913START domain
CDDcd088753.57E-76159367No hitNo description
Gene3DG3DSA:3.30.530.201.4E-20163332IPR023393START-like domain
SuperFamilySSF559611.22E-33164368No hitNo description
SMARTSM002346.0E-36164367IPR002913START domain
PfamPF018522.7E-47165366IPR002913START domain
PfamPF086701.2E-50692832IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MAVTSSCKEG NKIAMDNGKY VRYTPEQVEA LERLYYECPK PSSMRRQQLI REYPILSNIE  60
PKQIKVWFQN RRCREKQRKE ASRLQAVNRK LTAMNKLLME ENDRLQKQVS QLVYEKSYFR  120
QQSQQQAGLA TTDTSCDSVV TSGHQHHLTP QHPPRDASPA GLLSIADETL TEFLSKATGT  180
AVEWVQMPGM KPGPDSIGIV AISHGCTGVA ARACGLVGLD PTRVAEILKD RPSWFRDCRA  240
VDVINVLSTG NGGTIELLYM QLYAPTTLAP ARDFWLLRYT SVLEDGSLVV CERSLNNTQN  300
GPNMPPAANF VRAEMLPSGY LIRPCEGGGS IIHIPWSVPE VLRPLYESST LLAQKTTMAA  360
LRHLRQISQE ISQPNVTGWG RRPAALRALS QKLSKGFNEA VNGFTDEGWS MLESDGADDI  420
TLLVNSSPGK MMGINLSYTN GFPSVGTAVL CAKASMLLQN VPPAILLRFL REHRSEWADS  480
GIDAYSAAAI KAGPCSLPMS RGGSFGGQVI LPLAHTIEHE EFMEVIKLEN MGHYRDDMIM  540
PGDIFLLQLC SGVDENAVGS CAELIFAPID ASFSDDALII PSGFRIIPLD SGTDASSPSR  600
TLDLASTLEV GTAGNRTTGD RSGRCGNSKS VMTIAFQFVC EIHLQENIAA MARQYVRSII  660
ASVQRVALAL SPSNFGSHAG FQSPPGSPEA QTLARWICQS YRCFLRMELL KQEGTESILK  720
SLWHHTDAIL CCSMKAPPIF MFGNQAGLDM LETTLVALQD ISLEKIFDEN GRKALFAEFP  780
QVMQQGFMCL QGGICLSSMG RAVSYERAVA WKVVNDEENA HCICFMFINW SFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643921.10.0PREDICTED: homeobox-leucine zipper protein ATHB-8-like
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A1U8IU420.0A0A1U8IU42_GOSHI; homeobox-leucine zipper protein ATHB-8-like isoform X1
STRINGGorai.001G026800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]