PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_07197_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 833aa MW: 91664 Da PI: 6.6007 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.1 | 6.2e-18 | 19 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L ++ +++ +q+kvWFqNrR +ek+ Cotton_A_07197_BGI-A2_v1.0 19 KYVRYTPEQVEALERLYYECPKPSSMRRQQLIREYpilsNIEPKQIKVWFQNRRCREKQ 77 5679*****************************************************97 PP | |||||||
2 | START | 158 | 7.3e-50 | 165 | 366 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlev 84 +a e+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++++v Cotton_A_07197_BGI-A2_v1.0 165 IADETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPT-RVAEILKDRPSWFRDCRAVDVINV 246 68899*****************************************************.8888888888************** PP ECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCE CS START 85 issg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksngh 161 +s+g g+++l +++l+a+++l+p Rdf+ +Ry+ l++g++v++++S++++q+ p+ +++vRae+lpSg+li+p+++g+ Cotton_A_07197_BGI-A2_v1.0 247 LSTGngGTIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPNmppAANFVRAEMLPSGYLIRPCEGGG 329 ********************************************************9999*********************** PP EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 s +++ ++++++lr+l++s++ ++kt++a+l+++++ Cotton_A_07197_BGI-A2_v1.0 330 SIIHI-------PWSVPEVLRPLYESSTLLAQKTTMAALRHLRQ 366 **998.......9**************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.839 | 14 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-14 | 16 | 82 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.38E-15 | 19 | 79 | No hit | No description |
SuperFamily | SSF46689 | 8.13E-16 | 19 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.6E-15 | 20 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-17 | 21 | 77 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.14E-6 | 71 | 110 | No hit | No description |
PROSITE profile | PS50848 | 22.913 | 155 | 376 | IPR002913 | START domain |
CDD | cd08875 | 3.57E-76 | 159 | 367 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.4E-20 | 163 | 332 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.22E-33 | 164 | 368 | No hit | No description |
SMART | SM00234 | 6.0E-36 | 164 | 367 | IPR002913 | START domain |
Pfam | PF01852 | 2.7E-47 | 165 | 366 | IPR002913 | START domain |
Pfam | PF08670 | 1.2E-50 | 692 | 832 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 833 aa Download sequence Send to blast |
MAVTSSCKEG NKIAMDNGKY VRYTPEQVEA LERLYYECPK PSSMRRQQLI REYPILSNIE 60 PKQIKVWFQN RRCREKQRKE ASRLQAVNRK LTAMNKLLME ENDRLQKQVS QLVYEKSYFR 120 QQSQQQAGLA TTDTSCDSVV TSGHQHHLTP QHPPRDASPA GLLSIADETL TEFLSKATGT 180 AVEWVQMPGM KPGPDSIGIV AISHGCTGVA ARACGLVGLD PTRVAEILKD RPSWFRDCRA 240 VDVINVLSTG NGGTIELLYM QLYAPTTLAP ARDFWLLRYT SVLEDGSLVV CERSLNNTQN 300 GPNMPPAANF VRAEMLPSGY LIRPCEGGGS IIHIPWSVPE VLRPLYESST LLAQKTTMAA 360 LRHLRQISQE ISQPNVTGWG RRPAALRALS QKLSKGFNEA VNGFTDEGWS MLESDGADDI 420 TLLVNSSPGK MMGINLSYTN GFPSVGTAVL CAKASMLLQN VPPAILLRFL REHRSEWADS 480 GIDAYSAAAI KAGPCSLPMS RGGSFGGQVI LPLAHTIEHE EFMEVIKLEN MGHYRDDMIM 540 PGDIFLLQLC SGVDENAVGS CAELIFAPID ASFSDDALII PSGFRIIPLD SGTDASSPSR 600 TLDLASTLEV GTAGNRTTGD RSGRCGNSKS VMTIAFQFVC EIHLQENIAA MARQYVRSII 660 ASVQRVALAL SPSNFGSHAG FQSPPGSPEA QTLARWICQS YRCFLRMELL KQEGTESILK 720 SLWHHTDAIL CCSMKAPPIF MFGNQAGLDM LETTLVALQD ISLEKIFDEN GRKALFAEFP 780 QVMQQGFMCL QGGICLSSMG RAVSYERAVA WKVVNDEENA HCICFMFINW SFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017643921.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-8-like | ||||
Swissprot | Q39123 | 0.0 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | A0A1U8IU42 | 0.0 | A0A1U8IU42_GOSHI; homeobox-leucine zipper protein ATHB-8-like isoform X1 | ||||
STRING | Gorai.001G026800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2022 | 26 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 0.0 | homeobox gene 8 |