PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07159_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 327aa    MW: 36600.8 Da    PI: 6.6843
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07159_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20178228255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAaka+++a+ kl+g
  Cotton_A_07159_BGI-A2_v1.0 178 HYRGVRQRP-WGKFAAEIRDP---NrRGSRIWLGTFDTAIEAAKAYDRAAFKLRG 228
                                 8********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.44E-32177236No hitNo description
Gene3DG3DSA:3.30.730.102.1E-32177237IPR001471AP2/ERF domain
SMARTSM003804.3E-37178242IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-23178237IPR016177DNA-binding domain
PfamPF008472.1E-14178228IPR001471AP2/ERF domain
PROSITE profilePS5103224.223178236IPR001471AP2/ERF domain
PRINTSPR003671.4E-13179190IPR001471AP2/ERF domain
PRINTSPR003671.4E-13218238IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MESSSEVSSA LQYIEQYLLD ENQFTPAGLG SFSTANQWIN EPIPEVSTSP SQSLCSQTST  60
SDSCLTLSNF NCLDVDDFFN FSPNFPGFES NRMDVFEFDS KPQFIHLTAP KPFEFAPQIT  120
ELSAVKPPAP SNSSSSSHNR KPSLKISLPH KVEWIQFRKP YSTKAQPTNS NSEDKNKHYR  180
GVRQRPWGKF AAEIRDPNRR GSRIWLGTFD TAIEAAKAYD RAAFKLRGSK AILNFPLEAG  240
KLDVTAIDGE RKRSRDDGAW DEKQVKAVKR ANDDVTKARD NGDGPLTPSN WTSFMDWDNE  300
AKGIFNMPLL SPLSPHPPLG FQQVTVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-30175237264ATERF1
3gcc_A6e-30175237264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636637.10.0PREDICTED: ethylene-responsive transcription factor 5-like
RefseqXP_017636653.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotO803411e-71EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A2P5Y2M70.0A0A2P5Y2M7_GOSBA; Uncharacterized protein
STRINGGorai.008G232600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.18e-58ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]