PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_07157_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 320aa MW: 35925.7 Da PI: 5.7552 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.8 | 1.8e-20 | 177 | 227 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f+ta eAaka+++a+ kl+g Cotton_A_07157_BGI-A2_v1.0 177 HYRGVRQRP-WGKFAAEIRDP---NrKGSRVWLGTFDTAIEAAKAYDRAAFKLRG 227 8********.**********9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.89E-32 | 176 | 235 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-32 | 176 | 236 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.289 | 177 | 235 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-38 | 177 | 241 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-23 | 177 | 236 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-14 | 177 | 227 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-13 | 178 | 189 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-13 | 217 | 237 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MESSSEVSSR LQYIEQYLLD ENQFPAVGSW SFSNENQWTN YPKSEVSNSQ SHSLYPQTST 60 SDSCLTVSNF NSLDEDDFFN FSTNFPGFES NQSDVFEFDS KPQSIHLTTP KSLTSNATAC 120 EFQVKSLSSS NSTSNSQSRK PSLKISLPHK VEWIQFGKPD LTEVKPKNSN TEEKTKHYRG 180 VRQRPWGKFA AEIRDPNRKG SRVWLGTFDT AIEAAKAYDR AAFKLRGSKA ILNFPLEAGK 240 LDVIAADGER KRIRDDDAGD EREVKAVKRV NDDVTKARDN GDAPLTPSNW TSFLDCDNDT 300 KGLFNMPLLS PLGLHQVIVI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-31 | 176 | 236 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 7e-31 | 174 | 236 | 2 | 64 | ATERF1 |
3gcc_A | 7e-31 | 174 | 236 | 2 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC713910 | 0.0 | KC713910.1 Gossypium hirsutum ethylene-responsive transcription factor 11 (ERF11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636154.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF105-like | ||||
Swissprot | O80341 | 2e-64 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A1U8MT84 | 0.0 | A0A1U8MT84_GOSHI; ethylene-responsive transcription factor ERF105-like | ||||
STRING | Gorai.008G232700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 2e-60 | ethylene responsive element binding factor 5 |
Publications ? help Back to Top | |||
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