PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07124_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 350aa    MW: 40724.4 Da    PI: 6.57
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07124_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.68.1e-5671361129
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratks 80 
                                 +ppGfrFhPtdeelv++yL+kkv++k+++l +vik+vd+y++ePwdL++  ++ a e++ewyfFs++dkky+tg+r+nratk+
  Cotton_A_07124_BGI-A2_v1.0   7 VPPGFRFHPTDEELVDYYLRKKVASKRIDL-DVIKDVDLYRIEPWDLQElcRIGAeEQNEWYFFSHKDKKYPTGTRTNRATKA 88 
                                 69****************************.9***************954555442556************************ PP

                         NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                 g+Wkatg+dk++++ ++ l+g++ktLvfykgrap+g+k+dW+mheyrle
  Cotton_A_07124_BGI-A2_v1.0  89 GFWKATGRDKAIYC-RHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                                 **************.999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-614156IPR003441NAC domain
PROSITE profilePS5100559.4777156IPR003441NAC domain
PfamPF023651.1E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MNNFTNVPPG FRFHPTDEEL VDYYLRKKVA SKRIDLDVIK DVDLYRIEPW DLQELCRIGA  60
EEQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YCRHCLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GTPQEEGWVV CRVFKKRMTT VQKVGEYDSS CWYDEQISFM  180
QDFESPRRIP QPYASYPHQY PCKQELQLQH SFPHDPFLQL PQLESPRLPQ SVASVSCNSV  240
VPYGSNLQSS SLSQEEHMQQ GHHQQNLNSL YNNGEQAVDQ VTDWRVLDKF VASQLSHEEA  300
SKENNYSNAA ASFHVGEQMD LLGDESKRPG IAHQEYTSTS NSSCQIDLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-51615714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636289.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9FWX21e-158NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A2P5Y8H90.0A0A2P5Y8H9_GOSBA; Uncharacterized protein
STRINGGorai.008G236400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21112678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-153NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]