PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_07064_BGI-A2_v1.0 | ||||||||
Common Name | F383_03781 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 695aa MW: 77315.8 Da PI: 8.9269 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.3 | 7e-24 | 111 | 212 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L + Cotton_A_07064_BGI-A2_v1.0 111 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIARDVHGEIWKFRHIYRGTPRRHLLTTGWSSFVNHKKLVA 191 89****************************997556555..8***************************************** PP T-EEEEEE-SSSEE..EEEEE-S CS B3 77 gDfvvFkldgrsefelvvkvfrk 99 gD++vF + +++el+v+++r+ Cotton_A_07064_BGI-A2_v1.0 192 GDSIVFL--RAENGELCVGIRRA 212 *******..449999******97 PP | |||||||
2 | Auxin_resp | 112.1 | 5.4e-37 | 267 | 350 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 a+ a+++++Fe+vY+Prast+eF+vk++ v++a++v+++ mRfkmafeted+s++++ +Gtv++v+ +dp+rWpnS+Wr+L Cotton_A_07064_BGI-A2_v1.0 267 AVALAANGQPFEIVYYPRASTPEFCVKASAVRAAMRVPWCSLMRFKMAFETEDCSRISWfMGTVSSVHIADPLRWPNSPWRLL 349 577899****************************************************************************9 PP Auxin_resp 83 k 83 + Cotton_A_07064_BGI-A2_v1.0 350 Q 350 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-37 | 104 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.19E-29 | 109 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.95E-22 | 110 | 211 | No hit | No description |
PROSITE profile | PS50863 | 13.098 | 111 | 213 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.0E-23 | 111 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-21 | 111 | 212 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-30 | 267 | 350 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 16.624 | 583 | 663 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MRKEAEKSLD PQLWHACAGS MVQIPPVNSK VFYFPQGHAE HSLYPVDFSS SPPIPALLLC 60 RVASVKFLAD AETDEVYAKI MLVPLPNTEP DLENDAVFGG GSDNVEKPAS FAKTLTQSDA 120 NNGGGFSVPR YCAETIFPRL DYTADPPVQT VIARDVHGEI WKFRHIYRGT PRRHLLTTGW 180 SSFVNHKKLV AGDSIVFLRA ENGELCVGIR RAKRGNDTGA ESGLGNGNYV SPYGGFSGFL 240 KEDESKITRK RSPRGKGKVR AEAVVEAVAL AANGQPFEIV YYPRASTPEF CVKASAVRAA 300 MRVPWCSLMR FKMAFETEDC SRISWFMGTV SSVHIADPLR WPNSPWRLLQ VTWDEPDLLQ 360 NVERVSPWLV ELVPNMLPVH LSPFSTVTPR KKLRLPEHLD FPLVEQFPMP PFSGHPLRSS 420 NPLRCLSDNA PAGIQGARHA QFRLSSSDPH LNKLKSGLFP SGFQLFDPQP RVPNGISMTK 480 HTDSNDDNLS CLLTVGNSSP KKKSENGKRH QFLLFGQPIL TEQQLSHSCS TGVKTSVKNE 540 DKRKDSSNGS GSALENQLSP EKSFTTRLLW RQDYQTPEPG SATGHCKVFL ESEDVGRTLD 600 LTVLGSYEEL YRRLANMFGR ERSEMLGHVL YRDATGAVKQ TGDEPFSTFM KTVKRLNIRM 660 DSRNDADGRS WLTGIRTAEN RLEGPNKRGP LSIFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-81 | 9 | 375 | 51 | 391 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF467065 | 0.0 | EF467065.1 Gossypium hirsutum auxin response factor 3 (ARF3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017603180.1 | 0.0 | PREDICTED: auxin response factor 10-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A0B0MSB4 | 0.0 | A0A0B0MSB4_GOSAR; Auxin response factor | ||||
STRING | Gorai.009G107800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Publications ? help Back to Top | |||
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