PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07061_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 852aa    MW: 93610.6 Da    PI: 6.5042
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07061_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-182481457
                                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Cotton_A_07061_BGI-A2_v1.0 24 YVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 81
                                5789****************************************************97 PP
2START156.91.6e-491633702204
                                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEE CS
                       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlev 84 
                                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  ++    +e+l+d++ W+++++  e+   
  Cotton_A_07061_BGI-A2_v1.0 163 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFTISQSCSGVAARACGLVSLEPI-KIAEILKDRPSWSRDCRNLEVFTM 244
                                 7899******************************************************.7777777777*******9999999 PP

                                 ECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCE CS
                       START  85 issg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksngh 161
                                    g  g+++l +a+  a+++l+p Rdf+++Ry+ +l+ g++v++++S++     p+    +++vRae+lpSg+li+p+++g+
  Cotton_A_07061_BGI-A2_v1.0 245 FPAGngGTIELVYAQKFAPTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGSGAGPSaaaAAQFVRAEVLPSGYLIRPCEGGG 327
                                 998888********************************************99999988999********************** PP

                                 EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                       START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                 s +++v+h +l++++++++lr+l++s+ + ++k++ a+l++ +
  Cotton_A_07061_BGI-A2_v1.0 328 SIIHIVDHLNLEAWSVPEVLRPLYESSKVIAQKMTIAALRYIR 370
                                 **************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.2E-152086IPR001356Homeobox domain
SuperFamilySSF466895.56E-162184IPR009057Homeodomain-like
CDDcd000864.79E-162383No hitNo description
PfamPF000467.6E-162481IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-182582IPR009057Homeodomain-like
PROSITE profilePS5007115.1272682IPR001356Homeobox domain
CDDcd146861.69E-675114No hitNo description
PROSITE profilePS5084827.691153381IPR002913START domain
CDDcd088758.90E-66157373No hitNo description
Gene3DG3DSA:3.30.530.203.9E-18162366IPR023393START-like domain
SMARTSM002341.3E-40162372IPR002913START domain
SuperFamilySSF559619.2E-32162374No hitNo description
PfamPF018526.5E-47163370IPR002913START domain
PfamPF086703.6E-49708851IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MALAQHRESS SDSSINKHLD GGKYVRYTAE QVEALERVYA ECPKPSSLRR QQLIRECPIL  60
SNIEPKQIKV WFQNRRCREK QKKESSRLQT VNRKLTAMNK LLMEENDRLQ KQVSQLVCEN  120
GYMKQQLHTV NVSSFTDANC DSLGTTPQHS LRDTNSPAGL LSIAEETLAE FLSKATGTAV  180
DWVQMPGMKP GPDSVGIFTI SQSCSGVAAR ACGLVSLEPI KIAEILKDRP SWSRDCRNLE  240
VFTMFPAGNG GTIELVYAQK FAPTTLAPAR DFWTLRYTTT LENGSLVVCE RSLSGSGAGP  300
SAAAAAQFVR AEVLPSGYLI RPCEGGGSII HIVDHLNLEA WSVPEVLRPL YESSKVIAQK  360
MTIAALRYIR QIAQETSGEV VYSLGRQPAV LRTFSQRLSR GFNDAINGFN DDGWSIMNCD  420
GTEDVIIAIN SSKSFSSTSN PANALSFLGG VLCAKASMLL QNIAPAVLVR FLREHRSEWA  480
DFNVDAYCAA SLKAGTNAYP GMRPTRFTGS QIIMPLGHTI EHEELLEVIR LEGHSFVQED  540
AFVSRDIHLL QICSGIDENA VGACSELVFA PIDEMFPDDG PLLPSGFRVI PLDSKSVRFH  600
CLPSELFPRL DSLTTNRTLD LTSSLEVGPA TNHAAGDTSS CRNTRSVLTI AFQFPFESNL  660
RDNVATMARQ YVRSVISSVQ RVAMAISPSG LNPAVGSKLS PGSPEALTLA HWICRSYRYH  720
LGAELLRSES LGGDSILKNL WQHQDAILCC SLKSQPDFIF ANQAGLDMLE TTLVALQDIT  780
LDKLFDESGR KALCSDFGKL MQQGYACLPA GICISTMGRH VSYEQAFAWK VLEADESTVH  840
CLAFSFVNWS FV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443272.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A0D2QDG50.0A0A0D2QDG5_GOSRA; Uncharacterized protein
STRINGGorai.009G107500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]