PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06981_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 300aa    MW: 32547.3 Da    PI: 9.644
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06981_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.82.8e-3953113262
                      zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                                 +e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++
  Cotton_A_06981_BGI-A2_v1.0  53 PEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKKK 113
                                 67899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3537109IPR003851Zinc finger, Dof-type
PfamPF027011.1E-3256111IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.46957111IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105995IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0009625Biological Processresponse to insect
GO:0009753Biological Processresponse to jasmonic acid
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVFPSVPLNH QQGSCSENPQ LPPLPTDHHV GASGSIRAGS MADRARLAKV PQPEAALKCP  60
RCESTNTKFC YFNNYSLTQP RHFCKTCRRY WTRGGALRNV PVGGGCRRNK KKKSSSSSKP  120
SASAERQSGS NSINAVIPSE ITAHLPHQTP HLPFMASLQN FSQYGIGNIG LNFGGIHGQI  180
GATSDGSERS DMGFQIGTNS DVSNAILSVR SGIHQQFPFI EPTNGLYPLQ SEYIEASPSM  240
VEESQLLRST SSSSRVSQRG PVKMENNNQG LNLSRPLLGV SDQNNQYWGG NSWTDLSGLK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447826.10.0PREDICTED: dof zinc finger protein DOF2.2-like isoform X2
TrEMBLA0A0D2RXF50.0A0A0D2RXF5_GOSRA; Uncharacterized protein
STRINGGorai.009G100100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28810.23e-50Dof family protein