PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06877_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 322aa    MW: 35926.1 Da    PI: 4.2536
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06877_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.84.8e-111911512127
                         NAM  12 eelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                                 eel    L k ++g++l++   + ev+ y+veP+ Lp      +  w+  s++dk+          +++g Wk + + +ev+s
  Cotton_A_06877_BGI-A2_v1.0  19 EELF-IGLDKLTSGSPLPC--NVIEVNPYSVEPQYLP------DGIWFLISSNDKT---------DMEHGLWKVKEQAREVFS 83 
                                 5555.34677777777777..4678999999999999......2345555555443.........3578************** PP

                         NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyr 127
                                  ++  +g ++t+v+ k + p+ +kt+Wvm+ ++
  Cotton_A_06877_BGI-A2_v1.0  84 -NSDIIGWRTTFVYDKDQVPHEHKTNWVMQVFS 115
                                 .999*************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.688139IPR003441NAC domain
SuperFamilySSF1019411.44E-1717138IPR003441NAC domain
PfamPF023651.6E-543114IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MIASAASLSA CIAITSTNEE LFIGLDKLTS GSPLPCNVIE VNPYSVEPQY LPDGIWFLIS  60
SNDKTDMEHG LWKVKEQARE VFSNSDIIGW RTTFVYDKDQ VPHEHKTNWV MQVFSTTQKR  120
LCDENANKET ISMCRVFLVP SDEMQQKVSS ARIGTENHLP QPPILDANCS TGIGSSSNRQ  180
VNKHDEKEGL AVAGTIPVPE HQDENDVEMD CFTEAHIDSF SRGDFLEMND LINHVSSSSS  240
GNSSAPSMSS DECFDSMAFL QDLDQDLVLE QNDIGKKLDV SASNRLDEVV LVPATLACHF  300
MSYYMPLSGE IWYHDIAMHE NY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638695.10.0PREDICTED: NAC domain-containing protein 82-like
RefseqXP_017638696.10.0PREDICTED: NAC domain-containing protein 82-like
TrEMBLA0A0B0Q0G30.0A0A0B0Q0G3_GOSAR; NAC domain-containing 78-like protein
STRINGGorai.010G012000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137081023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.14e-12NAC domain containing protein 28