PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_06824_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 313aa MW: 34540.6 Da PI: 6.6385 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 239 | 261 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k F k + ++H +++ Cotton_A_06824_BGI-A2_v1.0 239 FVCRKCEKAFAVKGDWRTHEKNC 261 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.98E-6 | 221 | 259 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 225 | 259 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MTDPWFNFMP LSPNYTSSSS PSTVPTQNHP NPSSQPRTIF NKSQIPHHHP LKEALPFINY 60 LSLTSQQQQE SIKEPSSSFM EEEDKSIISL FPTIVDDGDD GYDYDEDDDD NGGVTVELHI 120 GLPNPSSDLK SRASSPSKDL TADKLQWNPV TAGAASGNST TPLSKGQYWI PTPSQILVGP 180 TQKGPDSLKG TQPTAMLRLP CYCCSPGCKH NIDNPRAKPL KDFKTLQTHY KRKHGIKPFV 240 CRKCEKAFAV KGDWRTHEKN CGKVWYCICG SDFKHKRSLK DHTKAFGPTG HGAVGGVDSL 300 DEDDEPGSEV EPI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX618472 | 1e-103 | JX618472.1 Gossypium hirsutum clone NBRI_GE63960 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016712446.1 | 0.0 | PREDICTED: zinc finger protein WIP2-like | ||||
Refseq | XP_017625364.1 | 0.0 | PREDICTED: zinc finger protein WIP2-like isoform X2 | ||||
Swissprot | Q9SVY1 | 1e-88 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A1U8LCW4 | 0.0 | A0A1U8LCW4_GOSHI; zinc finger protein WIP2-like | ||||
STRING | Gorai.004G037000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24405 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-90 | C2H2 family protein |
Publications ? help Back to Top | |||
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