PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06782_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 225aa    MW: 25110.9 Da    PI: 8.8174
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06782_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-192978255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                +y+GVr ++ +gr++AeIrdp +   ++r++lg+f++aeeAa+a++aa+  ++g
  Cotton_A_06782_BGI-A2_v1.0 29 RYRGVRKRP-WGRFAAEIRDPLK---KTRVWLGTFDSAEEAARAYDAAAITFRG 78
                                69*******.**********743...5**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.79E-182986No hitNo description
Gene3DG3DSA:3.30.730.105.3E-322986IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-222987IPR016177DNA-binding domain
PfamPF008471.9E-132978IPR001471AP2/ERF domain
PROSITE profilePS5103224.3162986IPR001471AP2/ERF domain
SMARTSM003804.2E-382992IPR001471AP2/ERF domain
PRINTSPR003674.7E-113041IPR001471AP2/ERF domain
PRINTSPR003674.7E-115268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MRKGRGAAAA ADAAMKPAVE ANGSVKELRY RGVRKRPWGR FAAEIRDPLK KTRVWLGTFD  60
SAEEAARAYD AAAITFRGNK AKTNFPFNSS DFPAFGIDRH HRRNNEGFIA DGHRFHQTGG  120
YYEDPEVNPQ RPARSSMSST VESFSGPRPT QPPRKPSDFE AVSTRKYHPK MPRMAPEDCR  180
SDCDSSSSVV DDGDDDNVSS SRRKILPFDL NFPPLDEVDD LTLCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2029861472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1164470.0DQ116447.1 Gossypium hirsutum ethylene-responsive element-binding factor (ERF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625200.11e-166PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotO803392e-46ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A2P5WZY41e-163A0A2P5WZY4_GOSBA; Uncharacterized protein
STRINGGorai.004G032500.11e-133(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.14e-33ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]