PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_06773_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 161aa MW: 18045.9 Da PI: 9.1433 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00018 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Cotton_A_06773_BGI-A2_v1.0 44 FSCNYCQRKFFSSQALGGHQNAH 66 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.4E-6 | 40 | 71 | No hit | No description |
PROSITE profile | PS50157 | 11.011 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MNYQPNTSLR LSLPNDQLNL DLALEPSSSS SSSNSPTTTE PRVFSCNYCQ RKFFSSQALG 60 GHQNAHKLER TLAKKSRELS SSVQIHGSSL SGFSHPQRMQ SHVATFEQHH RAGRFAGEIG 120 YGRRDINYGP RDGMMGSWSS KGYRPEDVQD EFSHLDLSLR L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX618542 | 2e-45 | JX618542.1 Gossypium hirsutum clone NBRI_GE64060 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017625729.1 | 1e-117 | PREDICTED: zinc finger protein 2 | ||||
Swissprot | Q39261 | 1e-33 | ZFP2_ARATH; Zinc finger protein 2 | ||||
TrEMBL | A0A1U8LCZ8 | 1e-115 | A0A1U8LCZ8_GOSHI; zinc finger protein 2-like | ||||
TrEMBL | A0A2P5X5Y5 | 1e-115 | A0A2P5X5Y5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.004G031300.1 | 1e-107 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6621 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 4e-35 | zinc finger protein 2 |