PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06640_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 300aa    MW: 34036.2 Da    PI: 6.9681
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06640_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-194595155
                         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a++ a+++l+g
  Cotton_A_06640_BGI-A2_v1.0 45 CQYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDDAARRLYG 95
                                68*****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.0E-134595IPR001471AP2/ERF domain
CDDcd000185.82E-3245105No hitNo description
Gene3DG3DSA:3.30.730.102.4E-3046104IPR001471AP2/ERF domain
SMARTSM003806.2E-3546109IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2146104IPR016177DNA-binding domain
PROSITE profilePS5103222.61646103IPR001471AP2/ERF domain
PRINTSPR003672.4E-104758IPR001471AP2/ERF domain
PRINTSPR003672.4E-106985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVPHLHSLTN SLTHLLLMDS YKRSPLKPWK KGPTRGKGGP QNASCQYRGV RQRTWGKWVA  60
EIREPKKRTR LWLGSFATAE EAAMAYDDAA RRLYGPEAYL NLPHLRRIPT TTTTNLSNKS  120
STHKFKWIPS NNFVSMFPSS SPGLLNINAQ PSVHVIHQRL QELNNNGVLK TKTDTQSKNI  180
ADDVQMKEKD VVGVSSDKPQ IDLHEFLQQL GIKKDEKKQC EEEAVVNNND DAESTSTAMD  240
STMKDYYDEL VPFGENSSFN WDTMIEMHGG VDGFHGVEAS FQVHDHGYEE DLAFPTIWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1846103260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016709356.10.0PREDICTED: dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX52e-84DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A1U8L3Z60.0A0A1U8L3Z6_GOSHI; dehydration-responsive element-binding protein 2F-like
STRINGGorai.007G359400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81682638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.15e-74ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]