PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06427_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 475aa    MW: 52224.1 Da    PI: 6.988
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06427_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.41.1e-22209253145
                         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                 d+ep rCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Cotton_A_06427_BGI-A2_v1.0 209 DPEPERCRRTDGKKWRCSRDAVANQKYCERHVNRGRHRSRKRVEG 253
                                 79****************************************986 PP
2QLQ509.2e-18139175137
                         QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                 ++F+++Q+ +L++Q+l+yKy+ +n+ vP++Ll +++k
  Cotton_A_06427_BGI-A2_v1.0 139 GPFSPSQWIELEHQALIYKYITSNVAVPSNLLNPLKK 175
                                 59******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-8139175IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.5E-12140173IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.628140175IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.913209253IPR014977WRC domain
PfamPF088796.3E-19210252IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MDFGVPVLDG ILGPENGAPS QPQPKLERSE DHCQCSKLQR SGDLLTPKTM PLHQPSPLLR  60
SNSLVSADTG PHEHMLCFSS LNSEVPFINI KDGDFLEIST QNSGFSYYQP KPSSYTRNAG  120
YGSGSLNASM HGGFNGVRGP FSPSQWIELE HQALIYKYIT SNVAVPSNLL NPLKKSLYPY  180
GFTSSPAGYL PPNSLGWGSF HLGYSGSNDP EPERCRRTDG KKWRCSRDAV ANQKYCERHV  240
NRGRHRSRKR VEGQTGHAAS RTSNPKVLPM SSSMSTSVIT GGDASSSLAI AQQHQFKNWQ  300
SGATHHSADA LVNRIQDPWA SSVMSSTTNL KSNNSTFMIT KQGVPFAEFS PLDFGHVAYD  360
SPVNLSHRSS IVESKEYGPY LDFTTDQETL DQNLLHQLFD DWPKGESIHS VITWPGELRS  420
DLTQLSISIP MTSSEFSSSS SSPAQEKLAL SPLSLSREFD PIQMSSVVKN DISDF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-43LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-43LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016698732.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A0D2T6250.0A0A0D2T625_GOSRA; Uncharacterized protein
STRINGGorai.011G108400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-86growth-regulating factor 1