PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06324_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 348aa    MW: 38636.3 Da    PI: 9.0533
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06324_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.4e-52141391128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 lppGfrF Ptdeel+v+yL++kv+g++++l ++i e+d+yk++PwdLp+k+  +ekewyfFs+rd+ky++g+r+nr++ sgyW
  Cotton_A_06324_BGI-A2_v1.0  14 LPPGFRFYPTDEELLVQYLCRKVAGHHFSL-QIIGEIDLYKFNPWDLPSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYW 95 
                                 79***************************9.89***************8777899**************************** PP

                         NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 katg+dk +++  g++vg+kk Lvfy g+apkg+kt+W+mheyrl
  Cotton_A_06324_BGI-A2_v1.0  96 KATGTDKIITT-AGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139
                                 *******9999.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6610162IPR003441NAC domain
PROSITE profilePS5100560.84514162IPR003441NAC domain
PfamPF023654.5E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGVPETDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLQIIGEID LYKFNPWDLP  60
SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTAGRK VGIKKALVFY  120
VGKAPKGTKT NWIMHEYRLI ESSRKSGSSK LDDWVLCRIY KKNSSGQKPL SSVSSREQST  180
NGSSSSCSSQ LDDMLDSLPE LDDRFFALPR INSFKTLQND VKLGFQNLGI GNLDWGSLGG  240
LSSVPELVPS GQTQTQTQTQ SQGITSYGNS NVYVSTMPPT LCQMDVSTNK IGNSVEEEVQ  300
SGLRTQRADN SGIFQQNSNV LNSHNFSNSI DPYGFRCPTQ SGGFGFRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-10911684171NO APICAL MERISTEM PROTEIN
1ut4_B1e-10911684171NO APICAL MERISTEM PROTEIN
1ut7_A1e-10911684171NO APICAL MERISTEM PROTEIN
1ut7_B1e-10911684171NO APICAL MERISTEM PROTEIN
3swm_A1e-10811687174NAC domain-containing protein 19
3swm_B1e-10811687174NAC domain-containing protein 19
3swm_C1e-10811687174NAC domain-containing protein 19
3swm_D1e-10811687174NAC domain-containing protein 19
3swp_A1e-10811687174NAC domain-containing protein 19
3swp_B1e-10811687174NAC domain-containing protein 19
3swp_C1e-10811687174NAC domain-containing protein 19
3swp_D1e-10811687174NAC domain-containing protein 19
4dul_A1e-10911684171NAC domain-containing protein 19
4dul_B1e-10911684171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7063420.0EU706342.1 Gossypium hirsutum NAC domain protein NAC4 (NAC4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017639499.10.0PREDICTED: NAC domain-containing protein 72-like
SwissprotA0A3Q7HH641e-147JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBLA0A1U8KGU20.0A0A1U8KGU2_GOSHI; NAC domain-containing protein 72-like
STRINGGorai.002G073700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14352795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-128NAC family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]