PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06253_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 177aa    MW: 20882.4 Da    PI: 9.0105
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06253_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-171467356
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                ++ ++++eq++ Le+ F  n+++  e + +LA++lg++ rqV +W+qN+Ra++k
  Cotton_A_06253_BGI-A2_v1.0 14 NKKRLNQEQVRLLERSFSANKKLEPELKLQLANQLGVPPRQVAIWYQNKRARWK 67
                                566799***********************************************9 PP
2HD-ZIP_I/II108.74.2e-3514105293
                 HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                 +k+rl++eqv+lLE+sF++++kLepe K +la++Lg+ prqva+W+qn+RAR+kt+ lE dy++L+ ++++  +e++rLek+v
  Cotton_A_06253_BGI-A2_v1.0  14 NKKRLNQEQVRLLERSFSANKKLEPELKLQLANQLGVPPRQVAIWYQNKRARWKTQSLELDYNTLQVKLENALSEKRRLEKDV 96 
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  85 eeLreelke 93 
                                 + L+eel++
  Cotton_A_06253_BGI-A2_v1.0  97 KYLQEELRK 105
                                 *****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.823969IPR001356Homeobox domain
SMARTSM003899.9E-151173IPR001356Homeobox domain
SuperFamilySSF466892.78E-171178IPR009057Homeodomain-like
CDDcd000863.45E-121270No hitNo description
PfamPF000464.6E-151467IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.8E-181676IPR009057Homeodomain-like
PROSITE patternPS0002704467IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDFQSQKLYS PKYNKKRLNQ EQVRLLERSF SANKKLEPEL KLQLANQLGV PPRQVAIWYQ  60
NKRARWKTQS LELDYNTLQV KLENALSEKR RLEKDVKYLQ EELRKAQETM FAMKNNQRAN  120
HHHHQQQQDQ PLNYFVSCNS TGSSEEGGSS SFHEDHEVLQ IDELYACLIG GDRSTWS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6164390.0JX616439.1 Gossypium hirsutum clone NBRI_GE61116 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641152.11e-130PREDICTED: homeobox-leucine zipper protein ATHB-52
TrEMBLA0A1U8KLY11e-127A0A1U8KLY1_GOSHI; homeobox-leucine zipper protein ATHB-52-like
STRINGGorai.002G067100.11e-108(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121072632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-42homeobox protein 52