PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_06221_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 196aa MW: 22613.5 Da PI: 6.3076

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_06221_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.5	1.6e-14	81	130	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +++rr+++NRe+ArrsR RK++ ++eL v L +eN++L+++l++ ++ Cotton_A_06221_BGI-A2_v1.0 81 RKQRRMISNRESARRSRMRKQKHLDELLSQVVRLRNENQSLIDKLKHVSD 130 79****************************************99998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.7E-15	77	141	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.864	79	142	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.0E-12	81	153	No hit	No description
Pfam	PF00170	4.3E-12	81	130	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.61E-12	81	130	No hit	No description
CDD	cd14702	1.12E-18	82	133	No hit	No description
PROSITE pattern	PS00036	0	84	99	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MVPSELSTEL HYLAPENPIL IPDNLGMMQN TIPGFHFDRF LNIPSNSHIP LPAHEFIAQS 60 LCTSTSDEAE EHQLSRIIDE RKQRRMISNR ESARRSRMRK QKHLDELLSQ VVRLRNENQS 120 LIDKLKHVSD CHDQVVQENA RLKEEASDLR RMVTDLRTGS PYSLSLRELE DVPCNTAYLR 180 AEPTNQSIAN SVDLLY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	100	RRSRMRKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017636928.1	1e-143	PREDICTED: basic leucine zipper 8-like
TrEMBL	A0A2P5R5G9	1e-139	A0A2P5R5G9_GOSBA; Uncharacterized protein
TrEMBL	A0A2P5VT89	1e-139	A0A2P5VT89_GOSBA; Uncharacterized protein
STRING	Gorai.008G174500.1	1e-138	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3112	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13600.1	5e-41	basic leucine-zipper 58