PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_06171_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 348aa MW: 39048.5 Da PI: 4.4227 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.2e-19 | 47 | 96 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+++taeeAa+a+++a+ l+g Cotton_A_06171_BGI-A2_v1.0 47 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTYDTAEEAARAYDEAAYLLRG 96 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.25E-31 | 46 | 103 | No hit | No description |
PROSITE profile | PS51032 | 19.994 | 47 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-27 | 47 | 103 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-14 | 47 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-19 | 47 | 104 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.5E-35 | 47 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-8 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-8 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 348 aa Download sequence Send to blast |
MGKRKVMATD VIDEEKGNNN VDEKPAMDAN VAAVAAALSG GRRARKRFVG VRQRPSGRWV 60 AEIKDTIQKI RVWLGTYDTA EEAARAYDEA AYLLRGANTR TNFWPLSPSS ISKPALPSKI 120 ANLLLLRLKA RNDAASASSN MPPNFPLNQL DTICFEDFFN VPEDCSTSSS DCMLESFGST 180 CADPKSLHLE DNNNVDGNPD YVGSKEDIDI MDFQFLDSFG SSCDYCSPFE IAEEMVEPVE 240 EQQEDINSDD LDPCMLRETM KRMKYERKFS ASLYAFNGIP ECLRLKHHES ENNHNIQQQC 300 QPSNLRNSNS CENEMRLEFK EEDNQGIGSS SACEMWSLPD LPSITFIN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-14 | 47 | 103 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017635803.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | A0A1U8KPE5 | 0.0 | A0A1U8KPE5_GOSHI; ethylene-responsive transcription factor RAP2-11-like | ||||
STRING | Gorai.008G178900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19615 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 9e-15 | related to AP2 11 |