PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_06161_BGI-A2_v1.0 | ||||||||
Common Name | F383_12489, F383_12776 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 281aa MW: 32531.7 Da PI: 8.1682 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.9 | 1.1e-54 | 11 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeel+++yLk+++++k++++ ++i+evdiyk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nrat sgyW Cotton_A_06161_BGI-A2_v1.0 11 LPPGFRFHPTDEELIMFYLKNQAKSKPCPV-SIIPEVDIYKFDPWQLPDKAEFGENEWYFFSPRDRKYPNGVRPNRATVSGYW 92 79****************************.89***************99999****************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+dk+++s +++ vg+kk Lvfy+gr pkg+kt+W+mheyrl Cotton_A_06161_BGI-A2_v1.0 93 KATGTDKAIHS-GSKYVGVKKALVFYNGRPPKGVKTNWIMHEYRL 136 ***********.99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-66 | 8 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.151 | 11 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-27 | 12 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0009835 | Biological Process | fruit ripening | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 281 aa Download sequence Send to blast |
MERNTSSKSD LPPGFRFHPT DEELIMFYLK NQAKSKPCPV SIIPEVDIYK FDPWQLPDKA 60 EFGENEWYFF SPRDRKYPNG VRPNRATVSG YWKATGTDKA IHSGSKYVGV KKALVFYNGR 120 PPKGVKTNWI MHEYRLSDSH KQIKKHNGSM RLDDWVLCRI YKKKNSAEKI LDHKVEESNT 180 QIDRVGYSND DSESQELLKF PKTGSYSRLL ELDYMGPVSH LLNENTYISS FDFPNTIANI 240 GIEDVEKLQL GDIPYNYSTE SGNFQVNQNG ILMNPMVYQF Q |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-73 | 2 | 169 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-73 | 2 | 169 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-73 | 2 | 169 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-73 | 2 | 169 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-73 | 2 | 169 | 11 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-73 | 2 | 169 | 11 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-73 | 2 | 169 | 11 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-73 | 2 | 169 | 11 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-73 | 2 | 169 | 11 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-73 | 2 | 169 | 11 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-73 | 2 | 169 | 11 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-73 | 2 | 169 | 11 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-73 | 2 | 169 | 8 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-73 | 2 | 169 | 8 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00221 | DAP | Transfer from AT1G69490 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016703840.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
Refseq | XP_017636405.1 | 0.0 | PREDICTED: NAC transcription factor 29 | ||||
Swissprot | K4BNG7 | 1e-114 | NAP2_SOLLC; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0B0PXX8 | 0.0 | A0A0B0PXX8_GOSAR; NAC domain-containing 29-like protein | ||||
TrEMBL | A0A1U8KN22 | 0.0 | A0A1U8KN22_GOSHI; NAC transcription factor 29-like | ||||
STRING | Gorai.008G179900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7707 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-116 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
---|---|---|---|
|