PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06107_BGI-A2_v1.0
Common NameF383_05183
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 674aa    MW: 75004.5 Da    PI: 7.0597
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06107_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.8e-23120220198
                                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                 f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +
  Cotton_A_06107_BGI-A2_v1.0 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIHAKDVHGNIWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVA 200
                                 89****************************986545445..8***************************************** PP

                                 T-EEEEEE-SSSEE..EEEEE- CS
                          B3  77 gDfvvFkldgrsefelvvkvfr 98 
                                 gD++vF   + +++ l+v+++r
  Cotton_A_06107_BGI-A2_v1.0 201 GDSIVFL--RAENGDLCVGIRR 220
                                 *******..4488889****98 PP

2Auxin_resp113.32.3e-37276359183
                  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                                 a+++a+++++FevvY+Prast+eF+vk+++v++a+++++ +GmRfkmafetedss++++ +Gt++  + +dp+rWpnS+Wr+L
  Cotton_A_06107_BGI-A2_v1.0 276 AVSRAANRQPFEVVYYPRASTPEFCVKASSVRAAMQTHWYPGMRFKMAFETEDSSRISWfMGTISTAQVVDPIRWPNSPWRLL 358
                                 67899*****************************************************************************9 PP

                  Auxin_resp  83 k 83 
                                 +
  Cotton_A_06107_BGI-A2_v1.0 359 Q 359
                                 7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-37115224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-30118234IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-22118220No hitNo description
SMARTSM010192.0E-21120222IPR003340B3 DNA binding domain
PfamPF023623.0E-21120220IPR003340B3 DNA binding domain
PROSITE profilePS5086312.605120222IPR003340B3 DNA binding domain
PfamPF065072.1E-32276359IPR010525Auxin response factor
PROSITE profilePS5174512.549588666IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MITVMDCRKE VVKTSEKCLD PQLWHACAGN MVQMPAVNSK VFYFPQGHAE HANRNVDFGS  60
LLIPSLILCR ISAIKFMADP ETDEVYAKIM LVPLRENDFG YEDGFDGNIG MENLEKPPSF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTI HAKDVHGNIW KFRHIYRGTP  180
RRHLLTTGWS NFVNHKKLVA GDSIVFLRAE NGDLCVGIRR VKRGIGSGHE YPSSWNLGDG  240
SSGYSPLLRE GESKLMKNDS NGDLRGRIRP ENVIEAVSRA ANRQPFEVVY YPRASTPEFC  300
VKASSVRAAM QTHWYPGMRF KMAFETEDSS RISWFMGTIS TAQVVDPIRW PNSPWRLLQV  360
AWDEPDLLHD VKCVSPWLVE LVTNIPAIHL NHFSPPRKRM WLPQHPDLSL LGQIPMPSFS  420
DSSFRSSSPA CCITNNIPGG IQGARHAPFG LSSSDVRSSK LQSGLFPHDF NQLGHTIPPM  480
GHSSDYGNNR NISSSHTMGN LTQSLKESNE KKTPHILLFG QLIFCEQQVS QSCSDTIGNS  540
SSNGNTEKTV ISSDASGSAL HQNAHENSSD EGSPWYKELP KTNMGLETGH SQVFTESENV  600
GRTLDLSALR SYEELHGKLA NMFGVESSDM LRNMFYRDAA ASVKHTGDEP FSEFLKTARR  660
LTVLTDSGSD NMGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-79138033388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017615219.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0B0NLH20.0A0A0B0NLH2_GOSAR; Auxin response factor
STRINGGorai.012G004800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]