PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06087_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 275aa    MW: 30053.7 Da    PI: 8.1606
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06087_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042112134123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 y+C+ C+++Fs+   L  H  +H
  Cotton_A_06087_BGI-A2_v1.0 112 YECKTCNRTFSSFQALGGHRASH 134
                                 99**********99999998887 PP
2zf-C2H213.50.00022170192123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ++C++Cg  F++   L  H+r+H
  Cotton_A_06087_BGI-A2_v1.0 170 HECSICGAEFTSGQALGGHMRRH 192
                                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139129.8E-13111136IPR007087Zinc finger, C2H2
SuperFamilySSF576672.74E-9111134No hitNo description
PROSITE profilePS5015711.053112139IPR007087Zinc finger, C2H2
SMARTSM003550.063112134IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SuperFamilySSF576672.74E-9165192No hitNo description
Gene3DG3DSA:3.30.160.602.0E-4168194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.1E-13169194IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.346170197IPR007087Zinc finger, C2H2
SMARTSM003550.01170192IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDVVAMGCRH HTNVVKGKRT KRSRPQSPIP FAILCNNGGE VDGIGNSCSS SSFGYQDSTT  60
EEEEDMANCL ILLAQGKSRE SPKDMLVYKK FTSRKFLETA SNGTGKAGYY VYECKTCNRT  120
FSSFQALGGH RASHKKPKAT LSEAAMVEAA YEEQGPNNNN NNSKVKVKVH ECSICGAEFT  180
SGQALGGHMR RHRGSIGNHV NVLTTNTTLS LTVPMALESE KPKKPPNVLS LSLDLNLPAP  240
EDDHRESEFT FASSQQQQQQ SPLVFSASTL VDCHY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016684587.10.0PREDICTED: zinc finger protein ZAT5-like
RefseqXP_017613856.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A1U8J2M20.0A0A1U8J2M2_GOSHI; zinc finger protein ZAT5-like
STRINGGorai.012G006900.11e-172(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-62C2H2 family protein