PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_06085_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 267aa MW: 30693 Da PI: 5.1372

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_06085_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.6	4.1e-11	114	156	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +k++rrk +NR AA rsR+RKk++++ Le k+ Le+e ++L Cotton_A_06085_BGI-A2_v1.0 114 DKKQRRKLRNRDAAVRSRERKKMYVKDLEMKSRYLEGECRRLS 156 79************************************98886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.1E-12	110	174	No hit	No description
SMART	SM00338	2.3E-8	111	175	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.91	113	155	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-10	114	156	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.0E-10	115	172	No hit	No description
CDD	cd14704	1.08E-14	116	167	No hit	No description
PROSITE pattern	PS00036	0	118	133	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MEETNWESLL FEFDFPNVGN ILQNESESVT PPISTHSPDE KLIWTSSIGE IEKLLMEDDR 60 FDDKVETQPI PNEFLADLLV DSSPSGSGDV VIDDTAFDKQ NQTLFNVDND DPIDKKQRRK 120 LRNRDAAVRS RERKKMYVKD LEMKSRYLEG ECRRLSCLLQ WSIAENQALR FTLNQRCAFD 180 ASSAKQESAV LLLESLLLGS LLWFLGIMCL FTLQRLPKSL LENEEKRGPE RVAHSNLVGQ 240 SFVKTRRCKA SKRKMKEFNV TGIPIPF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	123	RRKLRNR
2	117	134	RRKLRNRDAAVRSRERKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22199238}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017615664.1	0.0	PREDICTED: bZIP transcription factor 60-like
Refseq	XP_017615665.1	0.0	PREDICTED: bZIP transcription factor 60-like
Swissprot	Q69XV0	6e-35	BZP50_ORYSJ; bZIP transcription factor 50
TrEMBL	A0A2P5RH68	1e-166	A0A2P5RH68_GOSBA; Uncharacterized protein
STRING	Gorai.012G007100.1	1e-166	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4634	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	5e-16	basic region/leucine zipper motif 60

Publications ? help Back to Top
Wakasa Y, et al. Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J., 2011. 65(5): p. 675-89 [PMID:21223397] Lu SJ, et al. Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 2012. 5(2): p. 504-14 [PMID:22199238]