PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06071_BGI-A2_v1.0
Common NameARF2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 1099aa    MW: 122028 Da    PI: 6.6617
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06071_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.21.4e-22131232199
                                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                 f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr+k++r++lt+GW+ Fv+ ++L +g
  Cotton_A_06071_BGI-A2_v1.0 131 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQTPA-QELVARDLHENVWKFRHIYRGKPKRHLLTTGWSLFVSGKRLFAG 212
                                 99*****************************9444443.48****************************************** PP

                                 -EEEEEE-SSSEE..EEEEE-S CS
                          B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                 D+v+F   ++++++l+++++r+
  Cotton_A_06071_BGI-A2_v1.0 213 DSVLFI--RDETQQLLLGIRRA 232
                                 ******..5578889***9997 PP

2Auxin_resp120.11.7e-39257340183
                  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                                 aahaa+++s+F+v+YnPras seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sd+dpvrW+nS+Wr+L
  Cotton_A_06071_BGI-A2_v1.0 257 AAHAAANNSPFTVFYNPRASLSEFVIPLAKYYKAVYnHQISPGMRFRMMFETEESGTRRYMGTITGISDIDPVRWKNSQWRNL 339
                                 79********************************9879********************************************9 PP

                  Auxin_resp  83 k 83 
                                 +
  Cotton_A_06071_BGI-A2_v1.0 340 Q 340
                                 7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-40122246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.55E-41122260IPR015300DNA-binding pseudobarrel domain
CDDcd100172.22E-18130222No hitNo description
SMARTSM010195.7E-23131233IPR003340B3 DNA binding domain
PfamPF023621.1E-20131232IPR003340B3 DNA binding domain
PROSITE profilePS5086311.998131233IPR003340B3 DNA binding domain
PfamPF065077.2E-35257340IPR010525Auxin response factor
PfamPF023091.4E-69861072IPR033389AUX/IAA domain
PROSITE profilePS5174527.029871071IPR000270PB1 domain
SuperFamilySSF542777.46E-710001065No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1099 aa     Download sequence    Send to blast
MGKSELTDGC LSDDAGEAPE RRHINPELWQ ACAGPLVNLP AAGTHVVYFP QGHSEQVAAS  60
MKRDVDAQIP NYPNLPSKLL CLLHNVTLHA DPETDEVYAQ MTLQPVSSFD KEALLRSDLS  120
LKSNKPQPEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQTPAQE LVARDLHENV  180
WKFRHIYRGK PKRHLLTTGW SLFVSGKRLF AGDSVLFIRD ETQQLLLGIR RANRQPANLS  240
SSVLSSDSMH IGILASAAHA AANNSPFTVF YNPRASLSEF VIPLAKYYKA VYNHQISPGM  300
RFRMMFETEE SGTRRYMGTI TGISDIDPVR WKNSQWRNLQ VGWDESTAGE RRNRVSIWEI  360
EPVTAPFFIC PSPLFRSKRP RQPGMLADEY SDLDNLFKRP MPWLGDDICL KDSDAHPGLS  420
LVQWMNMQQN PLLANSMQPN FMQSLAGSTM QNFDGADLSH QMGLSAPQMP QPNNLQFNAH  480
RLPQKVQQLD QVPKLPSTMN SLGSIIQPQQ LNDMTQQSRQ NLVAQTLPSS QVLQPQALVR  540
SNNILHQQQT SNPTHQLPLS LPQNLQQQQQ YLVGPNHPQN LMHSQLPDPL NQHLQVPDNQ  600
VQFQLMQKLQ QQQQLLLAQQ SALQQPGLLA QPQDQQRQLL DASQSFSSSV TASQVLEMPQ  660
NIPTLLPQSN VAPQQMPKNN SQANVWFSQP PLQSKVQQQQ TGMLPEVPGL VGPFQTTATN  720
QFSTAVSSVM TSAAVAAPSV ITDDNPSCST SPSTNCPSVL QPMIDSRVHR SAGLGDDISQ  780
SAATVLNPNA LETMSTKANM VKEQQQKSVK PLLNISKSQN QGSFAPQNCI NGATAHADCL  840
DTSSSTTSVC LSQSDAHLHQ NTLSYNPQTM LLRDTSQEGE VRAYPRNNVS YGNNMDSQIE  900
MPMNSDTLSA KGMMGLGKDF SNHLSSGGIL ASYENPKDAQ QELSSSMVSQ PYRVPDMAFN  960
SIDPTINHSS FINRNAWTPP SQFQRLRTYT KVYKRGAVGR SIDITRYSGY DELKQDLARR  1020
FGIEGQLEDR GRVGWKLVYV DHENDVLLVG DDPWEEFINC VRCIKILSPQ EVQQMSMDGE  1080
FGNSVLPNQD CSSSGNGNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1622436151388Auxin response factor 5
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1539840.0DQ153984.1 Gossypium arboreum auxin response factor 2 (ARF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001316947.10.0auxin response factor 19-like
TrEMBLQ3Y6G50.0Q3Y6G5_GOSAR; Auxin response factor
STRINGGorai.012G009000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162291013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19