PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_06071_BGI-A2_v1.0 | ||||||||
Common Name | ARF2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 1099aa MW: 122028 Da PI: 6.6617 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.2 | 1.4e-22 | 131 | 232 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr+k++r++lt+GW+ Fv+ ++L +g Cotton_A_06071_BGI-A2_v1.0 131 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQTPA-QELVARDLHENVWKFRHIYRGKPKRHLLTTGWSLFVSGKRLFAG 212 99*****************************9444443.48****************************************** PP -EEEEEE-SSSEE..EEEEE-S CS B3 78 DfvvFkldgrsefelvvkvfrk 99 D+v+F ++++++l+++++r+ Cotton_A_06071_BGI-A2_v1.0 213 DSVLFI--RDETQQLLLGIRRA 232 ******..5578889***9997 PP | |||||||
2 | Auxin_resp | 120.1 | 1.7e-39 | 257 | 340 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 aahaa+++s+F+v+YnPras seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sd+dpvrW+nS+Wr+L Cotton_A_06071_BGI-A2_v1.0 257 AAHAAANNSPFTVFYNPRASLSEFVIPLAKYYKAVYnHQISPGMRFRMMFETEESGTRRYMGTITGISDIDPVRWKNSQWRNL 339 79********************************9879********************************************9 PP Auxin_resp 83 k 83 + Cotton_A_06071_BGI-A2_v1.0 340 Q 340 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-40 | 122 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.55E-41 | 122 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.22E-18 | 130 | 222 | No hit | No description |
SMART | SM01019 | 5.7E-23 | 131 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-20 | 131 | 232 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.998 | 131 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.2E-35 | 257 | 340 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.4E-6 | 986 | 1072 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 27.02 | 987 | 1071 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 7.46E-7 | 1000 | 1065 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1099 aa Download sequence Send to blast |
MGKSELTDGC LSDDAGEAPE RRHINPELWQ ACAGPLVNLP AAGTHVVYFP QGHSEQVAAS 60 MKRDVDAQIP NYPNLPSKLL CLLHNVTLHA DPETDEVYAQ MTLQPVSSFD KEALLRSDLS 120 LKSNKPQPEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQTPAQE LVARDLHENV 180 WKFRHIYRGK PKRHLLTTGW SLFVSGKRLF AGDSVLFIRD ETQQLLLGIR RANRQPANLS 240 SSVLSSDSMH IGILASAAHA AANNSPFTVF YNPRASLSEF VIPLAKYYKA VYNHQISPGM 300 RFRMMFETEE SGTRRYMGTI TGISDIDPVR WKNSQWRNLQ VGWDESTAGE RRNRVSIWEI 360 EPVTAPFFIC PSPLFRSKRP RQPGMLADEY SDLDNLFKRP MPWLGDDICL KDSDAHPGLS 420 LVQWMNMQQN PLLANSMQPN FMQSLAGSTM QNFDGADLSH QMGLSAPQMP QPNNLQFNAH 480 RLPQKVQQLD QVPKLPSTMN SLGSIIQPQQ LNDMTQQSRQ NLVAQTLPSS QVLQPQALVR 540 SNNILHQQQT SNPTHQLPLS LPQNLQQQQQ YLVGPNHPQN LMHSQLPDPL NQHLQVPDNQ 600 VQFQLMQKLQ QQQQLLLAQQ SALQQPGLLA QPQDQQRQLL DASQSFSSSV TASQVLEMPQ 660 NIPTLLPQSN VAPQQMPKNN SQANVWFSQP PLQSKVQQQQ TGMLPEVPGL VGPFQTTATN 720 QFSTAVSSVM TSAAVAAPSV ITDDNPSCST SPSTNCPSVL QPMIDSRVHR SAGLGDDISQ 780 SAATVLNPNA LETMSTKANM VKEQQQKSVK PLLNISKSQN QGSFAPQNCI NGATAHADCL 840 DTSSSTTSVC LSQSDAHLHQ NTLSYNPQTM LLRDTSQEGE VRAYPRNNVS YGNNMDSQIE 900 MPMNSDTLSA KGMMGLGKDF SNHLSSGGIL ASYENPKDAQ QELSSSMVSQ PYRVPDMAFN 960 SIDPTINHSS FINRNAWTPP SQFQRLRTYT KVYKRGAVGR SIDITRYSGY DELKQDLARR 1020 FGIEGQLEDR GRVGWKLVYV DHENDVLLVG DDPWEEFINC VRCIKILSPQ EVQQMSMDGE 1080 FGNSVLPNQD CSSSGNGNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-162 | 24 | 361 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ153984 | 0.0 | DQ153984.1 Gossypium arboreum auxin response factor 2 (ARF2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001316947.1 | 0.0 | auxin response factor 19-like | ||||
TrEMBL | Q3Y6G5 | 0.0 | Q3Y6G5_GOSAR; Auxin response factor | ||||
STRING | Gorai.012G009000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16229 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |