PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05856_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 309aa    MW: 34962 Da    PI: 5.006
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05856_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.8e-151663148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg+W + Ed++l+  ++++G  +W++ ++  g+ R++k+c++rw +yl
  Cotton_A_05856_BGI-A2_v1.0 16 RGPWNPSEDLRLITFIQKHGHQNWRALPKQAGLLRCGKSCRLRWINYL 63
                                89******************************99************97 PP
2Myb_DNA-binding25.62.9e-08821062348
                                 -HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqkyl 48 
                                 +W++Ia++++ gRt++++k+ w+++l
  Cotton_A_05856_BGI-A2_v1.0  82 RWSKIASYLP-GRTDNEIKNVWNTHL 106
                                 6*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-23765IPR009057Homeodomain-like
PROSITE profilePS5129421.5331167IPR017930Myb domain
SMARTSM007175.4E-121565IPR001005SANT/Myb domain
PfamPF002494.2E-141663IPR001005SANT/Myb domain
SuperFamilySSF466895.47E-2316107IPR009057Homeodomain-like
CDDcd001675.83E-91863No hitNo description
Gene3DG3DSA:1.10.10.607.3E-1666110IPR009057Homeodomain-like
SMARTSM007170.006368108IPR001005SANT/Myb domain
PROSITE profilePS512949.72368110IPR017930Myb domain
PfamPF002492.1E-682106IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGKGRAPCCD KEKVKRGPWN PSEDLRLITF IQKHGHQNWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFAKDEEDTI IRWSKIASYL PGRTDNEIKN VWNTHLKKRL SSMNGNVDQK  120
YESMATLSSS SCVTSMSSFN DKKPNEAFEM AVVSDKANHG SPSEEPEALS SSSISSNVSN  180
SNQVNVSNPE IQQGPLFNFT GCYYNTSEEV NKPETTFDIP LESDLEFWNM LDSLVPFQPE  240
GIQSHNETQC PDFGEAENEW LLYLEQELGL DPKDGGFEAE PLLVPEMNGM GTMCHYHNTV  300
QPYEPNSKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-20161104105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591543e-37AJ459154.1 Gossypium hirsutum partial myb125 gene, clone pGhMYB125.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625294.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1U8JP990.0A0A1U8JP99_GOSHI; myb-related protein Myb4-like
STRINGGorai.004G269400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.13e-69myb domain protein 58