PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05845_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 340aa    MW: 38739.3 Da    PI: 7.574
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05845_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.53.1e-54101391128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratks 80 
                                 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL+ k ++ +  ++ewyfFs++dkky+tg+r+nrat++
  Cotton_A_05845_BGI-A2_v1.0  10 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKdKcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTA 91 
                                 69****************************.9***************943444443456************************ PP

                         NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 g+Wkatg+dk+++ ++++++g++ktLvfy+grap+g+ktdW+mheyrl
  Cotton_A_05845_BGI-A2_v1.0  92 GFWKATGRDKAIHLSNSKKIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 139
                                 **********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-603159IPR003441NAC domain
PROSITE profilePS5100558.3610159IPR003441NAC domain
PfamPF023653.5E-2811139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MMAGNGQLSV PPGFRFHPTD EELLYYYLRK KVSYEAIDLD VIREVDLNKL EPWDLKDKCR  60
IGSGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIHLSNSKK IGMRKTLVFY  120
TGRAPHGQKT DWIMHEYRLD DDDSDVQEDG WVVCRVFKKK NLIRGNFQAD FNQEDNNYNH  180
MKNIASLSAH QMEPRPNNNH LHTLYDYSFD GSMHLPQLFS PESSAVAASS FISPLSLNSM  240
DVECSQNLLR LTSSSGGGGG GGGGGLMQQD QIRYNGEWSF LDKLLTNHPM SLDHHHHHHH  300
HQSQAKYIPS LQLDHVGSSS QKFPFQYPGC ETAEGLKFSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-51716114167NO APICAL MERISTEM PROTEIN
1ut4_B4e-51716114167NO APICAL MERISTEM PROTEIN
1ut7_A4e-51716114167NO APICAL MERISTEM PROTEIN
1ut7_B4e-51716114167NO APICAL MERISTEM PROTEIN
4dul_A4e-51716114167NAC domain-containing protein 19
4dul_B4e-51716114167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6173391e-114JX617339.1 Gossypium hirsutum clone NBRI_GE62433 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017626429.10.0PREDICTED: protein SOMBRERO-like
SwissprotQ9MA171e-123SMB_ARATH; Protein SOMBRERO
TrEMBLA0A1U8LKE60.0A0A1U8LKE6_GOSHI; protein SOMBRERO-like
STRINGGorai.004G268500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66532542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-115NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]