PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05844_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 323aa    MW: 37188.7 Da    PI: 4.7413
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05844_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.31e-5561331128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksg 81 
                                 lppGfrFhPtdeelv +yL++k++g+++el evi+evd+yk+ePwdLp k  + +++ ewyf+s+rdkky++g+r+nrat+ g
  Cotton_A_05844_BGI-A2_v1.0   6 LPPGFRFHPTDEELVAYYLHNKITGRPIEL-EVIPEVDLYKFEPWDLPdKsYLPSKDMEWYFYSPRDKKYPNGSRTNRATRGG 87 
                                 79****************************.99**************95335666888************************* PP

                         NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 yWkatgkd++v s ++++vg+kktLv+y+grap+g +t+Wvmheyrl
  Cotton_A_05844_BGI-A2_v1.0  88 YWKATGKDRAVQS-QKRAVGIKKTLVYYRGRAPHGIRTNWVMHEYRL 133
                                 ************9.9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-643150IPR003441NAC domain
PROSITE profilePS5100560.7016150IPR003441NAC domain
PfamPF023651.3E-287133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAPMSLPPGF RFHPTDEELV AYYLHNKITG RPIELEVIPE VDLYKFEPWD LPDKSYLPSK  60
DMEWYFYSPR DKKYPNGSRT NRATRGGYWK ATGKDRAVQS QKRAVGIKKT LVYYRGRAPH  120
GIRTNWVMHE YRLLNSTLKD CYALCRVFKK NIQILKPKEE EAVGNNNNVD KEKQLHGEET  180
SGNEIPKGRQ VEIEDENLIT SSSDLTQGTS YETGMAMADD NQPPFTSDEA NSSANNISSS  240
LAMDFSPNLI QAEGYTNVEY QVPYPPLELE DFPQINISET KAEMMDEYMV YDKYKDYMNG  300
SLEEIFSLCP SQDISMPLYM HQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-58115115169NAC domain-containing protein 19
3swm_B5e-58115115169NAC domain-containing protein 19
3swm_C5e-58115115169NAC domain-containing protein 19
3swm_D5e-58115115169NAC domain-containing protein 19
3swp_A5e-58115115169NAC domain-containing protein 19
3swp_B5e-58115115169NAC domain-containing protein 19
3swp_C5e-58115115169NAC domain-containing protein 19
3swp_D5e-58115115169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625747.10.0PREDICTED: NAC domain-containing protein 86-like
SwissprotQ9FFI53e-84NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A1U8JP710.0A0A1U8JP71_GOSHI; NAC domain-containing protein 86-like
STRINGGorai.004G268400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81232640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-103NAC domain containing protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]