PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05843_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 300aa    MW: 33836.3 Da    PI: 8.7944
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05843_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171360148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg W++eEd++lv+ ++ +G g+W+++++  g+ R++k+c++rw +yl
  Cotton_A_05843_BGI-A2_v1.0 13 RGLWSPEEDDKLVKHITTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
                                788*******************************************97 PP
2Myb_DNA-binding56.85.3e-1866109146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 rg++T+eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Cotton_A_05843_BGI-A2_v1.0  66 RGSFTAEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                                 89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-25563IPR009057Homeodomain-like
PROSITE profilePS5129417.457860IPR017930Myb domain
SuperFamilySSF466897.86E-3010107IPR009057Homeodomain-like
SMARTSM007172.2E-121262IPR001005SANT/Myb domain
PfamPF002492.3E-151360IPR001005SANT/Myb domain
CDDcd001673.10E-101660No hitNo description
PROSITE profilePS5129427.22861115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2664115IPR009057Homeodomain-like
SMARTSM007177.4E-1765113IPR001005SANT/Myb domain
PfamPF002493.4E-1666109IPR001005SANT/Myb domain
CDDcd001673.33E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGHRCCSKQK VKRGLWSPEE DDKLVKHITT HGHGSWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFT AEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLLSQGL  120
DPKTHNLLSS RQRASNKLAC KYSSSSPSSQ SQHGSFTVFN ITSHAKDTNN NNNTTMMMNP  180
PPPVVTFPHQ SPNPNTTYAQ NLYGSSMDTP FVSSSSCFGN MLYESDPCIW DDANAVVETF  240
EEPRVDSLPP MPQPQQQEND DKIDMDCSLM EGGAVLRAYG LRVVHHSWQK VLIGFLPWKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-31131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6190811e-117JX619081.1 Gossypium hirsutum clone NBRI_GE64810 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624849.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A1U8LK880.0A0A1U8LK88_GOSHI; myb-related protein 308-like
STRINGGorai.004G268300.11e-173(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79552539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.13e-86myb domain protein 67