PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_05740_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 170aa MW: 20569.8 Da PI: 9.409 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.3 | 2.8e-31 | 20 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratks 80 lp G+rF P+d+el+++yL +k++g +l++ +vik++d y+++P ++ k+ +++e y+F+k+++ ++ +r +r t++ Cotton_A_05740_BGI-A2_v1.0 20 LPIGYRFVPRDHELISFYLFNKIKGFQLPF-DVIKNIDFYYLDPFHFSpCefKHGRKNNEAYYFTKTKEIRSKMDRIERHTRN 101 699***************************.99**************64423444566799********************** PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWk+ gk +e+++ +++ +glk+ +vf+ r p+ +Wvmhe+++ Cotton_A_05740_BGI-A2_v1.0 102 GYWKSCGKAEEIKH-RDRIIGLKRLFVFH-WRIPELGFGKWVMHEFSI 147 **************.8999**********.78888899********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-32 | 18 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.489 | 20 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-18 | 21 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MAEALVSDDS FLDEYENKAL PIGYRFVPRD HELISFYLFN KIKGFQLPFD VIKNIDFYYL 60 DPFHFSPCEF KHGRKNNEAY YFTKTKEIRS KMDRIERHTR NGYWKSCGKA EEIKHRDRII 120 GLKRLFVFHW RIPELGFGKW VMHEFSIHPT FLVPHPLLDE KIKAKVYLYI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-18 | 20 | 147 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017625880.1 | 1e-124 | PREDICTED: NAC domain-containing protein 45-like | ||||
TrEMBL | A0A1U8MUF3 | 1e-121 | A0A1U8MUF3_GOSHI; NAC domain-containing protein 45-like | ||||
STRING | Gorai.004G258200.1 | 1e-114 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17601 | 7 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03200.1 | 2e-23 | NAC domain containing protein 45 |