PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05698_BGI-A2_v1.0
Common NameF383_04730
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 254aa    MW: 28863.4 Da    PI: 7.4225
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05698_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-161461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+ Ed++l+++++ +G g W+  +++ g++R++k+c++rw++yl
  Cotton_A_05698_BGI-A2_v1.0 14 KGAWTANEDQILKNYITIHGEGKWRDLPQKAGLKRCGKSCRLRWLNYL 61
                                79********************************************97 PP
2Myb_DNA-binding51.42.6e-1667111147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 rg+ + eE+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Cotton_A_05698_BGI-A2_v1.0  67 RGNISIEEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                                 678889****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.576961IPR017930Myb domain
SuperFamilySSF466898.41E-2912108IPR009057Homeodomain-like
SMARTSM007173.0E-111363IPR001005SANT/Myb domain
PfamPF002491.2E-131461IPR001005SANT/Myb domain
CDDcd001672.91E-81661No hitNo description
PROSITE profilePS5129425.05462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2465116IPR009057Homeodomain-like
SMARTSM007179.4E-1566114IPR001005SANT/Myb domain
PfamPF002491.9E-1467112IPR001005SANT/Myb domain
CDDcd001671.36E-780112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRRPCCAKE GLNKGAWTAN EDQILKNYIT IHGEGKWRDL PQKAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SIEEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLSKRMQGQK  120
RNISPNTPQV SSHNVIRTKA VKCTKAVNVD TLDPKSETLV NSPSETPSSS AINEDNTNNN  180
SMDFLVDFDI NELLAFEYNA IPELYRTQNG GDKMGNNVAD NGEYSHGTEF CQAGEHLDLR  240
GLESYLNLED EWIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3362850.0AF336285.1 Gossypium hirsutum GHMYB38 (ghmyb38) mRNA, complete cds.
GenBankFJ1980510.0FJ198051.1 Gossypium barbadense agamous-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016716893.10.0PREDICTED: transcription factor TT2-like
RefseqXP_017627637.10.0PREDICTED: transcription factor TT2-like
SwissprotQ9FJA23e-63TT2_ARATH; Transcription factor TT2
TrEMBLA0A0B0PYE50.0A0A0B0PYE5_GOSAR; Transcription factor MYB3-like protein
TrEMBLA0A1U8LTZ70.0A0A1U8LTZ7_GOSHI; Transcription factor TT2
STRINGGorai.001G015200.11e-174(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-54myb domain protein 3
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Liu C,Jun JH,Dixon RA
    MYB5 and MYB14 Play Pivotal Roles in Seed Coat Polymer Biosynthesis in Medicago truncatula.
    Plant Physiol., 2014. 165(4): p. 1424-1439
    [PMID:24948832]
  3. Zhu Z, et al.
    Characterization of the cis elements in the proximal promoter regions of the anthocyanin pathway genes reveals a common regulatory logic that governs pathway regulation.
    J. Exp. Bot., 2015. 66(13): p. 3775-89
    [PMID:25911741]
  4. Liu Y,Shi Z,Maximova SN,Payne MJ,Guiltinan MJ
    Tc-MYBPA an Arabidopsis TT2-like transcription factor and functions in the regulation of proanthocyanidin synthesis in Theobroma cacao.
    BMC Plant Biol., 2015. 15: p. 160
    [PMID:26109181]
  5. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  6. Li Y, et al.
    Two IIIf Clade-bHLHs from Freesia hybrida Play Divergent Roles in Flavonoid Biosynthesis and Trichome Formation when Ectopically Expressed in Arabidopsis.
    Sci Rep, 2016. 6: p. 30514
    [PMID:27465838]
  7. Li C,Zhang B,Chen B,Ji L,Yu H
    Site-specific phosphorylation of TRANSPARENT TESTA GLABRA1 mediates carbon partitioning in Arabidopsis seeds.
    Nat Commun, 2018. 9(1): p. 571
    [PMID:29422671]