PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05677_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 1157aa    MW: 129430 Da    PI: 6.6485
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05677_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.58.8e-17135259199
                                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE.........................E CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy.......................r 53 
                                 f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ + W++++iy                       +
  Cotton_A_05677_BGI-A2_v1.0 135 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHENPWTFRHIYrgmilfialpfhelvastsmhkaS 215
                                 99*****************************954.4444.49***********************************998777 PP

                                 EETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                          B3  54 kksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                 ++++r++lt+GW+ Fv+ ++L +gD+v+F +d++s+f  +++++r+
  Cotton_A_05677_BGI-A2_v1.0 216 GQPKRHLLTTGWSVFVSNKRLFAGDSVLFIRDEKSQF--LLGIRRA 259
                                 77888*************************7766666..9999997 PP
2Auxin_resp113.22.5e-37284372183
                  Auxin_resp   1 aahaastksvFevvYnPr......astseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnS 77 
                                 aahaa+++s+F+++YnPr      as+seFvv+++k++ka++++vs+GmRf+m+fete++  rr++Gt++g+sdldpvrW+nS
  Cotton_A_05677_BGI-A2_v1.0 284 AAHAAANNSPFTIFYNPRyynfdrASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEECGVRRYMGTITGISDLDPVRWKNS 366
                                 79***************644444489********************************************************* PP

                  Auxin_resp  78 kWrsLk 83 
                                 +Wr+L+
  Cotton_A_05677_BGI-A2_v1.0 367 QWRNLQ 372
                                 ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-39125287IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-38127273IPR015300DNA-binding pseudobarrel domain
CDDcd100173.15E-15134258No hitNo description
SMARTSM010195.1E-11135260IPR003340B3 DNA binding domain
PROSITE profilePS5086310.391135260IPR003340B3 DNA binding domain
PfamPF065072.3E-32284372IPR010525Auxin response factor
PfamPF023091.4E-910271115IPR033389AUX/IAA domain
PROSITE profilePS5174526.19210301123IPR000270PB1 domain
SuperFamilySSF542778.34E-910461108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1157 aa     Download sequence    Send to blast
MKAPPNGFLA NPAEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFVPSYPNL PSKLICMLHN VTLHVSKKLA NHYPEPETDE VYAQMTLQPV NKYDREALLA  120
SDMGLKQSRQ PAEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFSMQP PAQELQARDL  180
HENPWTFRHI YRGMILFIAL PFHELVASTS MHKASGQPKR HLLTTGWSVF VSNKRLFAGD  240
SVLFIRDEKS QFLLGIRRAN RQQPALSSSV ISSDSMHIGI LAAAAHAAAN NSPFTIFYNP  300
RYYNFDRASP SEFVVPLAKY NKAMYTQVSL GMRFRMMFET EECGVRRYMG TITGISDLDP  360
VRWKNSQWRN LQVGWDESTA GERPTRVSIW DIEPVVTPFY ICPPPFFRPR FPKQPGMPDN  420
ENDVENAFKR AMPWLGDDFG MKDSPNSIFP GLSLVQWMNM QQNNQFAAAQ SGLFPSMVSS  480
NPLHSSLGTD DPSKLLNFQA PMLPASNMQF NKANPNQVNQ LSQAPMTWPQ QQQLQQLLQT  540
PLNQNPQQQL QQRQSQLQPQ SHLQQQPQPQ PPLQQQQQQQ QRQQAQPQPQ QQQPPLQQLQ  600
QQQRQQAQPQ LLQQQFLPAQ VNNGIIASNQ MPNQNLHQPG VYSQIQQQQQ QQQILTSNGQ  660
STQTTLPANK ASYPLTSLAQ DTQIQQQVEQ QPNLVQSQQQ QTQLQQNLSQ RSQQQPQIQQ  720
LAQQGLSEQQ FQLLQKLQQQ QQSSQQLLSP TGSLSQSPVV QQQPMHQQNQ PMQQVPLSQS  780
QQTLGSNGFS TSMLMQPQQL VVSQSQNQNK PLMAMRTHSG LTDGDAPSCS TSPSTNNCQV  840
SPSSFLSRSQ QVPSMVVTDP VVEPASTLVQ ELQSKPDIRI KHELLASKGP DQSKYKSTVT  900
DQLEASSSGT SYCLDAGTIQ HNFSLPTFLE GDVQSHPRSN LQFSANIDGL APDTLLSRGY  960
DSQKDLQNLL SNYGSNPRDI DTELSTAAIS PQSFGVPNIP FKSGCSNDVA INDAGVLNGG  1020
LWANQTQRMR TYTKVQKRGS VGRSIDVTRY KGYDELRHDL ARMFGIEGQM EDPQSSDWKL  1080
VYVDHENDIL LVGDDPWEEF VSCVQSIKIL SSLEVQQMSL DGDLGNVPVP NQACSEIDSG  1140
NAWRGHYDDT SAASFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1611539345388Auxin response factor 5
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5790622e-87JX579062.1 Gossypium hirsutum clone NBRI_GE11229 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609970.10.0auxin response factor 19 isoform X1
TrEMBLG7JS690.0G7JS69_MEDTR; Auxin response factor
STRINGAES921670.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26292665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19