PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_05656_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 23557.6 Da PI: 4.7592 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 8.1e-19 | 22 | 73 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+ykGVr +k +g+Wv+eIr p++ r r++lg+++++e+Aa+a +aa +l+g+ Cotton_A_05656_BGI-A2_v1.0 22 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAAQYCLRGN 73 89*****999.**********933...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.6E-12 | 22 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-20 | 22 | 81 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.17E-27 | 22 | 82 | No hit | No description |
SMART | SM00380 | 6.5E-29 | 23 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-28 | 23 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.628 | 23 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-9 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-9 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MVKPTQSEST TNHGSDPTGN GSKYKGVRKR KWGKWVSEIR LPNSRERIWL GSYDSPEKAA 60 RAFDAAQYCL RGNGAKFNFP DNPPEIAGAR SLGPHEIQAV ASRFANESVN NNNAMTDPTV 120 EQYTSSSSVS VSDGGLATQV ESHETRTDWS SFLSMLDSNE GMSSDYGFYP GLGHLPGDHF 180 YPPPPPPPVD DDMDDDQNYP GDGFSQHSSF LWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 23 | 80 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 30 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ944169 | 0.0 | KJ944169.1 Gossypium hirsutum cultivar Reba B50 ethylene-responsive transcription factor ERF-IIb1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017647700.1 | 1e-159 | PREDICTED: ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q84QC2 | 6e-53 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A2P5XGV5 | 1e-157 | A0A2P5XGV5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G019100.1 | 1e-145 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1614 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 3e-51 | ERF family protein |
Publications ? help Back to Top | |||
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