PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05641_BGI-A2_v1.0
Common NameF383_12203
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 271aa    MW: 30641.6 Da    PI: 7.5978
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05641_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68e-151461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+ Ed++l  +++ +G g W+  +++ g++R++k+c++rw++yl
  Cotton_A_05641_BGI-A2_v1.0 14 KGAWTALEDKILTSYIHVHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                                79********************************************97 PP
2Myb_DNA-binding50.93.6e-1667111147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
  Cotton_A_05641_BGI-A2_v1.0  67 RGNISHDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                                 78999*****************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.637961IPR017930Myb domain
SuperFamilySSF466892.14E-2712108IPR009057Homeodomain-like
SMARTSM007175.5E-121363IPR001005SANT/Myb domain
PfamPF002491.6E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-221568IPR009057Homeodomain-like
CDDcd001671.18E-81661No hitNo description
PROSITE profilePS5129424.1762116IPR017930Myb domain
SMARTSM007176.5E-1566114IPR001005SANT/Myb domain
PfamPF002492.4E-1467111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2369115IPR009057Homeodomain-like
CDDcd001671.03E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRSPCCSKE GLNKGAWTAL EDKILTSYIH VHGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SHDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKRAKAQA  120
SIEAKTIPTE SRLNEPSKSS TKIEVIRTKA IRCSSKVMVP LQPPATHRHG QHHCTNNNEE  180
MGGGIATIEA HNGIQMLESL YSDGGSDLLS FEINERLKSH DGGEFEENPM QQHFPLGEAM  240
FKDWSTSHCL DDNYATDLES LAFLLDTDEW P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3362840.0AF336284.1 Gossypium hirsutum GHMYB36 (ghmyb36) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640369.10.0PREDICTED: myb-related protein 308-like
SwissprotQ9FJA21e-61TT2_ARATH; Transcription factor TT2
TrEMBLA0A346KJX20.0A0A346KJX2_GOSAR; Transcription factor TT2
STRINGGorai.001G020600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.17e-64MYB family protein
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Liu C,Jun JH,Dixon RA
    MYB5 and MYB14 Play Pivotal Roles in Seed Coat Polymer Biosynthesis in Medicago truncatula.
    Plant Physiol., 2014. 165(4): p. 1424-1439
    [PMID:24948832]
  3. Zhu Z, et al.
    Characterization of the cis elements in the proximal promoter regions of the anthocyanin pathway genes reveals a common regulatory logic that governs pathway regulation.
    J. Exp. Bot., 2015. 66(13): p. 3775-89
    [PMID:25911741]
  4. Liu Y,Shi Z,Maximova SN,Payne MJ,Guiltinan MJ
    Tc-MYBPA an Arabidopsis TT2-like transcription factor and functions in the regulation of proanthocyanidin synthesis in Theobroma cacao.
    BMC Plant Biol., 2015. 15: p. 160
    [PMID:26109181]
  5. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  6. Li Y, et al.
    Two IIIf Clade-bHLHs from Freesia hybrida Play Divergent Roles in Flavonoid Biosynthesis and Trichome Formation when Ectopically Expressed in Arabidopsis.
    Sci Rep, 2016. 6: p. 30514
    [PMID:27465838]
  7. Li C,Zhang B,Chen B,Ji L,Yu H
    Site-specific phosphorylation of TRANSPARENT TESTA GLABRA1 mediates carbon partitioning in Arabidopsis seeds.
    Nat Commun, 2018. 9(1): p. 571
    [PMID:29422671]