PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05624_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 270aa    MW: 29913.4 Da    PI: 7.7653
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05624_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.78.2e-38151151101
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                 aCa+Ck++rrkC+++C lap fpa+++k+f n++klFG++n++kl+++l+ ++r +a++++++eA++ra++Pv G++g+i +l
  Cotton_A_05624_BGI-A2_v1.0  15 ACAVCKFQRRKCTNNCLLAPFFPANRHKDFLNTRKLFGVRNIIKLIENLNFQQRVIAIRTIIFEANMRAQNPVGGCYGLICDL 97 
                                 7********************************************************************************** PP

                      DUF260  84 qqqleqlkaelallkeel 101
                                 ++++ + k++l+l++++l
  Cotton_A_05624_BGI-A2_v1.0  98 NNKIGEYKTQLNLVNQQL 115
                                 **************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.21714115IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-3415112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MQSHTATNSA AGSQACAVCK FQRRKCTNNC LLAPFFPANR HKDFLNTRKL FGVRNIIKLI  60
ENLNFQQRVI AIRTIIFEAN MRAQNPVGGC YGLICDLNNK IGEYKTQLNL VNQQLAIYKS  120
QSVFTQYQQQ QPQKQYNDGG DQNLDAGFSI FDGGGGGSSS PLLSAYDVFE SNLVKAELEG  180
SNVLSDVDED MKPLFGDNKR DQSFSFDSEG HVVFSDDKKE KQTFCVDSGG SKIQNSDQHV  240
SKQRGGLNQH QLKNDLNGGA SMFTLTNGKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-2271184114LOB family transfactor Ramosa2.1
5ly0_B8e-2271184114LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147750.0JX614775.1 Gossypium hirsutum clone NBRI_GE58409 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644679.10.0PREDICTED: LOB domain-containing protein 22-like isoform X2
TrEMBLA0A1U8LQS90.0A0A1U8LQS9_GOSHI; LOB domain-containing protein 22-like
TrEMBLA0A2P5X1340.0A0A2P5X134_GOSBA; Uncharacterized protein
STRINGGorai.001G022100.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2211645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.14e-36LOB domain-containing protein 22