PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_05619_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 60aa MW: 6822.79 Da PI: 9.4006

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_05619_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.6	9.6e-16	3	45	9	55
AP2 9 dkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++ +g W+AeIrdp + +r++lg+ +tae Aa+a+++a++k++g Cotton_A_05619_BGI-A2_v1.0 3 RP-WGEWAAEIRDP-----HraARVWLGTCDTAEAAARAYDEAALKFRG 45 67.********7.....338***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	20.679	1	53	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-27	2	54	IPR001471	AP2/ERF domain
CDD	cd00018	2.30E-13	2	55	No hit	No description
SMART	SM00380	4.1E-25	2	59	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.55E-18	2	54	IPR016177	DNA-binding domain
Pfam	PF00847	1.6E-9	2	45	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 60 aa Download sequence Send to blast
MQRPWGEWAA EIRDPHRAAR VWLGTCDTAE AAARAYDEAA LKFRGSRAKL NFPELVRLVP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-18	2	53	8	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	1e-18	2	53	11	63	ATERF1
3gcc_A	1e-18	2	53	11	63	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16227468}.
UniProt	Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269\|PubMed:23616605}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269\|PubMed:16227468, ECO:0000269\|PubMed:26961720}.
UniProt	INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269\|PubMed:23616605}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006346730.2	3e-29	PREDICTED: ethylene-responsive transcription factor ABR1-like
Refseq	XP_006357342.1	3e-29	PREDICTED: ethylene-responsive transcription factor ABR1-like
Swissprot	Q9FGF8	1e-25	ABR1_ARATH; Ethylene-responsive transcription factor ABR1
Swissprot	Q9FH54	2e-26	EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBL	A0A2P5Y3J3	1e-35	A0A2P5Y3J3_GOSBA; Uncharacterized protein
STRING	PGSC0003DMT400060659	9e-29	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50080.1	2e-22	ethylene response factor 110

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Choi DS,Hwang BK Proteomics and functional analyses of pepper abscisic acid-responsive 1 (ABR1), which is involved in cell death and defense signaling. Plant Cell, 2011. 23(2): p. 823-42 [PMID:21335377] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li T,Wu XY,Li H,Song JH,Liu JY A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network. Mol Plant, 2016. 9(5): p. 650-661 [PMID:26961720] Sanyal SK, et al. Arabidopsis CBL interacting protein kinase 3 interacts with ABR1, an APETALA2 domain transcription factor, to regulate ABA responses. Plant Sci., 2017. 254: p. 48-59 [PMID:27964784] Choi SW,Lee SB,Na YJ,Jeung SG,Kim SY Arabidopsis MAP3K16 and Other Salt-Inducible MAP3Ks Regulate ABA Response Redundantly. Mol. Cells, 2017. 40(3): p. 230-242 [PMID:28292003] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]