PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05613_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 581aa    MW: 64530.4 Da    PI: 5.8947
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05613_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.91.7e-085005381854
                                 HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                    Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                 +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Cotton_A_05613_BGI-A2_v1.0 500 MFQNflHPYPKDAEKHLLAIKSGLTRSQVSNWFINARVR 538
                                 5887779******************************88 PP
2BELL79.93.6e-26373442272
                        BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                 ++ +++kk++Ll+ll+ Vd+rY+q+ ++++tvis+F+a+++l++ ++++s+Al++iS+ +++L+++i++qi
  Cotton_A_05613_BGI-A2_v1.0 373 KRTVEAKKTQLLTLLQVVDDRYSQCLDEIHTVISAFHAATELDP-RVHASFALHTISFLYKNLRERISNQI 442
                                 56789***************************************.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.2E-24295440IPR006563POX domain
PfamPF075269.0E-27301439IPR006563POX domain
PROSITE profilePS5007111.046479542IPR001356Homeobox domain
SMARTSM003897.8E-6482546IPR001356Homeobox domain
CDDcd000862.59E-11482543No hitNo description
SuperFamilySSF466891.97E-15483551IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-26485548IPR009057Homeodomain-like
PfamPF059201.4E-14499538IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MENDMFSIPR PMVSQNSVVI NGIPPETITN NSVVESNLFN QINQNQTLVG FPVLPSVQGE  60
FGGDLCSDLH VSNHARFFDS NALIASVGRK VASDASLDSS GLEHNIEFHE QFIGRTPVSS  120
TPPASCGLQE NLNELAIVAP SIYPQDFRNY SSTECSDGIN STTVTSVNSV LNEVFGSMTN  180
KWDFEKFPGP LEHVGKTTLK TAFQPYSSIG CPDPNSWMAP NGANMSLNYP CGSSKNSNEL  240
SLSLATSLPG VISGNNIPDQ SSEINCCLNT TRLGSEQTSS NAKELSLSFG SDGPVQVSHL  300
ISGSRYLHAV QEILAQIANY SLDNLEQMSV GPGATMPFSS SCLAGRWMAV MDSNDCPNVD  360
GDTEVQLEAE LQKRTVEAKK TQLLTLLQVV DDRYSQCLDE IHTVISAFHA ATELDPRVHA  420
SFALHTISFL YKNLRERISN QILAMGANFN SECSRDREKS FQNSFIQEQW ALQQLKKKDQ  480
IWRPQRGLPE KSVSVLRAWM FQNFLHPYPK DAEKHLLAIK SGLTRSQVSN WFINARVRLW  540
KPMIEEMYSE MNKRKARQNE EGTKSNPRSQ ISINHQRFNF N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-14488546563Homeobox protein Meis2
3k2a_B2e-14488546563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017626220.10.0PREDICTED: homeobox protein ATH1
RefseqXP_017626228.10.0PREDICTED: homeobox protein ATH1
SwissprotP487311e-115ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A1U8LQK70.0A0A1U8LQK7_GOSHI; homeobox protein ATH1-like
STRINGGorai.001G023100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82282637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-113homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]