PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_05511_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 223aa MW: 25385.2 Da PI: 5.6213 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.4 | 1.9e-21 | 85 | 145 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ +e+ + +ps+++++e+A++l +++e++V++WFqNrRa+ k+ Cotton_A_05511_BGI-A2_v1.0 85 RQRWTPTPLQLQILENIYEQgTGTPSKQKIKEIASELaqhgRISETNVYNWFQNRRARSKR 145 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 101.4 | 6.4e-33 | 84 | 146 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RWtPtp Q++iLe++y++G+ tP+k++i++i++eL+++G+i+++NV++WFQNr+aR+++k Cotton_A_05511_BGI-A2_v1.0 84 ARQRWTPTPLQLQILENIYEQGTGTPSKQKIKEIASELAQHGRISETNVYNWFQNRRARSKRK 146 789**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.771 | 81 | 146 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-17 | 81 | 148 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.2E-13 | 83 | 150 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-19 | 84 | 149 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.15E-14 | 85 | 146 | No hit | No description |
Pfam | PF00046 | 3.7E-19 | 85 | 145 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MEWENQHGEE EYLQYQIQNG VCGKVMSDEQ VEELKKQIVA YSTISEQLAE LHKSMSAHHD 60 FTGIRFGNLY SDPISASVGH KITARQRWTP TPLQLQILEN IYEQGTGTPS KQKIKEIASE 120 LAQHGRISET NVYNWFQNRR ARSKRKFQVS TGSVNAEFEP DVSTKDKKTK PVGLDFIDNF 180 SHGVESFYFQ GSESGIDQLI GKEESSRGYD PYNNLVEQFG LLG |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017629879.1 | 1e-167 | PREDICTED: WUSCHEL-related homeobox 13-like | ||||
Swissprot | Q5QMM3 | 1e-60 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A0D2TSM6 | 1e-154 | A0A0D2TSM6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G372000.1 | 1e-154 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17223 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35550.1 | 7e-62 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
---|---|---|---|
|